Chromosome 1 Haplotype

Chromosome 1

Run ID: 3285 Total SNPs: 4348 Total Blocks: 597 Coverage: .8 Minimum Strains: 9

block 1	XXX	XXXX	129	A/H	AKR	B10	B/B	B/C	C3H	C57	MRL	NZB	NZW	A/J	BUB	FVB	LGJ	LPJ	SMJ		DBA
	4		2	2	2	2	2	2	2	2	2	2	2	2	0	0	0	0	0	X	1		4,203,313
Atp6v1h	5		2	2	2	2	2	2	2	2	2	2	2	0	2	2	2	2	2	X	1		5,128,406

block 2	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	BUB	C57	DBA	FVB	LPJ	NZW	SMJ		C3H	LGJ	MRL		NZB
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	X	0		5,130,719

C3H	MRL	SMJ	B/B	FVB	LGJ	LPJ	A/H	B/C	AKR	A/J	129		B10	BUB	C57		NZW	NZB		DBA
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	X	2	2	X	2	5,131,244
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	X	2	2	X	2	5,131,587
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	X	2	2	X	0	5,131,753
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	X	2	2	X	0	5,131,758
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	X	2	2	X	0	5,131,828
2	2	2	2	2	2	2	2	2	0	2	2	X	1	1	1	X	2	2	X	1	5,132,682
2	2	2	2	2	0	2	2	2	2	0	2	X	2	2	2	X	2	2	X	1	5,133,032
2	2	2	2	2	2	2	2	2	2	2	0	X	2	2	0	X	2	2	X	1	5,133,708
2	2	2	2	2	2	2	2	2	2	2	0	X	2	2	2	X	2	2	X	1	5,133,895
2	2	2	2	2	2	2	2	2	2	0	0	X	2	2	2	X	2	2	X	1	5,133,919
2	2	2	2	2	2	2	0	0	0	0	0	X	1	1	0	X	2	2	X	1	5,134,829
2	2	2	2	2	2	2	0	0	0	0	0	X	2	2	2	X	1	1	X	2	5,135,169
2	2	2	2	2	2	2	0	0	0	0	0	X	1	1	1	X	2	2	X	2	5,135,814
2	2	2	2	2	2	2	0	0	0	0	0	X	1	1	1	X	2	0	X	1	5,136,255
2	2	2	2	2	2	2	0	0	0	0	0	X	1	1	1	X	2	0	X	1	5,136,455
2	2	2	2	2	2	2	0	0	0	0	0	X	1	1	1	X	2	2	X	1	5,136,599
2	2	2	2	2	2	2	0	0	0	0	0	X	2	2	2	X	2	2	X	1	5,136,642
2	2	2	2	2	2	2	0	0	0	0	0	X	1	1	1	X	2	2	X	2	5,136,670
2	2	2	2	0	2	2	0	0	0	0	0	X	2	2	2	X	2	2	X	1	5,136,703
2	2	2	2	2	2	2	0	0	0	0	0	X	1	1	1	X	2	2	X	2	5,136,711
2	2	2	0	2	2	0	0	0	0	0	0	X	1	0	1	X	0	2	X	2	5,139,203
2	2	2	2	2	2	2	0	0	0	0	0	X	2	2	2	X	2	2	X	1	5,140,053
2	2	2	2	2	2	2	0	0	0	0	0	X	1	0	0	X	2	2	X	2	5,141,735

block 4	XXX	XXXX	B/B	BUB	DBA	LPJ	NZB	NZW	SMJ	FVB	LGJ		B10	C57		C3H	MRL		129	A/H	A/J	AKR	B/C
			2	2	2	2	2	2	2	2	2	X	1	0	X	2	0	X	0	0	0	0	0		5,141,994
			2	2	2	2	2	2	2	0	0	X	2	2	X	1	1	X	0	0	0	0	0		5,142,493

B/B	C57	DBA	FVB	LGJ	LPJ	MRL	NZB	NZW	SMJ		C3H
2	2	2	2	2	2	2	2	2	2	X	1	X	5,143,376
2	2	2	2	2	2	2	2	2	2	X	1	X	5,143,378
2	2	2	2	2	2	2	2	2	2	X	1	X	5,143,381

FVB	LPJ	NZB	NZW	SMJ	B/B		B10	BUB	C57		DBA	C3H		LGJ	MRL
2	2	2	2	2	0	X	1	1	1	X	2	0	X	2	2	X	5,144,324
2	2	2	2	2	0	X	2	2	2	X	2	0	X	1	1	X	5,144,510
2	2	2	2	2	2	X	2	2	2	X	1	0	X	2	2	X	5,144,901
2	2	2	2	2	2	X	1	1	1	X	2	2	X	2	2	X	5,144,958
1	1	1	1	1	1	X	2	2	2	X	2	2	X	2	2	X	5,145,034
2	2	2	2	2	2	X	1	1	1	X	2	2	X	2	2	X	5,145,162

block 7	XXX	XXXX	B10	C3H	C57	DBA	LGJ	MRL	NZB	NZW		B/B	SMJ		129	A/H	A/J	AKR	B/C	BUB	FVB	LPJ
			2	2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0	0	0	0		5,145,768

block 8	B10	B/B	C3H	C57	MRL	NZB	NZW	129	A/H	A/J	AKR	B/C	BUB	FVB	LGJ	LPJ	SMJ		DBA
	2	2	2	2	2	2	2	0	0	0	0	0	2	2	2	2	2	X	1	5,146,449
	2	2	2	2	2	2	2	2	2	2	2	2	0	0	0	0	0	X	1	5,599,087
Oprk1	2	2	2	2	2	2	2	2	2	2	2	2	0	0	0	0	0	X	1	5,600,173

block 9	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	C57	C3H	MRL		NZB	NZW		DBA		BUB	FVB	LGJ	LPJ	SMJ
			2	2	2	2	2	2	2	2	2	2	X	1	1	X	2	X	0	0	0	0	0		5,600,178
			2	2	2	2	2	2	2	2	0	0	X	2	2	X	1	X	0	0	0	0	0		5,600,330

block 10	XXX	XXXX	B10	C57	NZB	NZW	BUB		B/B	FVB	LPJ	SMJ		C3H	DBA	LGJ	MRL		129	A/H	A/J	AKR	B/C
Sntg1	8		1	1	1	1	0	X	2	2	2	2	X	2	2	2	2	X	0	0	0	0	0		8,471,932
			2	2	2	2	2	X	2	2	2	2	X	1	1	1	1	X	0	0	0	0	0		8,471,986

block 11	XXX	XXXX	B10	B/B	BUB	C57	DBA	FVB	LPJ	NZB	NZW	SMJ		C3H	LGJ	MRL		129	A/H	A/J	AKR	B/C
			2	2	2	2	2	2	2	2	2	2	X	1	1	1	X	0	0	0	0	0		8,472,561

C57	NZB	BUB	NZW	B10		C3H	LGJ	MRL	DBA		FVB	LPJ	SMJ	B/B
2	2	2	2	2	X	2	2	2	2	X	1	1	1	1	X	8,472,754
1	1	0	1	0	X	2	2	2	2	X	2	2	2	0	X	8,473,389
1	1	1	1	1	X	2	2	2	2	X	2	2	2	2	X	8,473,971
2	2	2	2	2	X	1	1	1	1	X	2	2	2	2	X	8,474,188
2	2	2	0	0	X	1	1	1	1	X	2	2	2	2	X	8,474,364
1	1	1	1	0	X	2	2	2	2	X	2	2	2	2	X	8,474,700
2	2	2	2	0	X	2	2	2	2	X	1	1	1	1	X	8,474,749
2	2	2	2	0	X	1	1	1	0	X	2	2	2	2	X	8,474,805
2	2	2	2	2	X	2	2	2	2	X	1	1	1	1	X	8,475,062
1	1	1	1	1	X	2	2	2	2	X	2	2	2	2	X	8,475,228
1	1	1	1	1	X	2	2	2	2	X	2	2	2	2	X	8,475,518

block 13	XXX	XXXX	B10	B/B	C3H	C57	DBA	FVB	LGJ	LPJ	MRL	NZB	NZW	SMJ		BUB		129	A/H	A/J	AKR	B/C
			2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0	0		8,483,629

BUB	NZW	NZB	C57	B10		C3H	DBA	LGJ	MRL		LPJ	SMJ	B/B	FVB
2	2	2	2	2	X	2	2	2	2	X	1	1	1	1	X	8,483,690
2	2	0	2	2	X	2	2	2	0	X	1	1	1	1	X	8,483,841
2	2	2	2	2	X	2	2	2	2	X	1	1	1	1	X	8,483,908
2	2	2	0	0	X	2	2	2	2	X	1	1	1	1	X	8,484,162
2	2	2	0	0	X	1	1	1	1	X	2	2	2	2	X	8,484,276
2	2	2	0	0	X	2	2	2	2	X	1	1	1	1	X	8,484,413
1	1	1	1	0	X	2	2	2	2	X	2	2	2	2	X	8,490,491
2	2	2	2	0	X	2	2	2	2	X	1	1	1	1	X	8,490,533
2	2	2	2	2	X	2	2	0	2	X	1	1	0	0	X	8,491,175

block 15	XXX	XXXX	B10	BUB	C3H	C57	LPJ	MRL	NZB	NZW	SMJ		DBA		129	A/H	A/J	AKR	B/B	B/C	FVB	LGJ
			2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0	0	0	0	0		8,491,176

block 16	XXX	XXXX	B10	BUB	C3H	C57	DBA	MRL	NZB	NZW	LGJ		B/B	LPJ	SMJ		129	A/H	A/J	AKR	B/C	FVB
			2	2	2	2	2	2	2	2	2	X	1	1	1	X	0	0	0	0	0	0		8,491,247
			2	2	2	2	2	2	2	2	0	X	1	1	1	X	0	0	0	0	0	0		8,491,513

B/B	BUB	C57	LPJ	NZW	SMJ	B10	NZB		C3H	MRL	LGJ	DBA
2	2	2	2	2	2	2	2	X	1	1	0	1	X	8,491,592
2	2	2	2	2	2	2	2	X	1	1	0	1	X	8,491,672
2	2	2	2	2	2	2	0	X	1	1	1	0	X	8,492,028
2	2	2	2	2	2	0	0	X	1	1	1	0	X	8,492,212
2	2	2	2	2	2	0	0	X	1	1	1	0	X	8,492,213

block 18	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	C3H	C57	MRL	NZB	NZW		DBA		BUB	FVB	LGJ	LPJ	SMJ
	13		2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0	0		13,727,872

block 19	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	C3H	C57	MRL	NZB	NZW		DBA		BUB	FVB	LGJ	LPJ	SMJ
	15		2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0	0		15,366,080

block 20	XXX	XXXX	129	A/H	A/J	AKR	B/B	B/C	C3H	DBA	NZB	NZW		B10	C57	MRL		BUB	FVB	LGJ	LPJ	SMJ
Tram2	21		2	2	2	2	2	2	2	2	2	2	X	1	1	1	X	0	0	0	0	0		21,223,534

block 21	XXX	XXXX	129	A/H	A/J	AKR	B/C	C3H	C57	DBA	LGJ	MRL	NZW	B10		SMJ		B/B	BUB	FVB	LPJ	NZB
			2	2	2	2	2	2	2	2	2	2	2	0	X	1	X	0	0	0	0	0		21,451,717
			2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0	0		21,451,748

block 22	XXX	XXXX	129	A/H	A/J	AKR	B10	B/C	C3H	C57	DBA	NZW	SMJ		LGJ	MRL		B/B	BUB	FVB	LPJ	NZB
			2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0		21,451,778

block 23	A/H	A/J	AKR	B10	B/C	C3H	C57	DBA	LGJ	NZW	B/B	MRL	129	NZB		SMJ		BUB	FVB	LPJ
Gsta3	2	2	2	2	2	2	2	2	2	2	0	0	2	0	X	1	X	0	0	0	21,452,327
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	21,452,360
	2	2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	X	0	0	0	21,452,403
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	21,452,411
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	21,452,413
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	21,452,424
	2	2	2	2	2	2	2	2