Chromosome 2 Haplotype

Chromosome 2

Run ID: 3286 Total SNPs: 2682 Total Blocks: 276 Coverage: .8 Minimum Strains: 9

block 1	XXX	B/C	BUB	DBA	LGJ	AKR	B/B	C3H	C57	MRL	A/H	A/J	NZB	B10	FVB		LPJ	129		NZW		SMJ
Hspa14	3	2	2	2	2	2	2	0	0	2	0	2	2	0	2	X	1	0	X	1	X	1	3,437,307
		2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	1	X	1	3,438,534
		2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	2	X	1	3,439,291
		2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	1	X	1	3,439,344
		2	2	2	2	2	0	2	2	2	2	2	0	2	2	X	1	1	X	2	X	2	3,442,501
		2	2	2	2	2	2	2	2	2	2	0	2	0	0	X	1	1	X	1	X	1	3,446,887
		2	2	2	2	0	2	2	2	0	0	0	0	0	2	X	1	1	X	1	X	1	3,446,888
		2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	2	X	1	3,447,042
		2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	1	X	1	3,448,816

block 2	BUB	C57	MRL	AKR	B/B	DBA	FVB	LGJ	NZB	A/H	A/J	B10	B/C	SMJ	LPJ	C3H	129		NZW
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	3,448,973
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	3,451,666
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	3,451,739
	2	2	2	2	2	2	2	2	2	0	2	2	0	2	2	2	2	X	1	3,451,880
	2	2	2	2	2	2	2	2	2	2	2	0	2	2	2	2	2	X	1	3,453,431
	2	2	2	2	2	2	2	2	2	2	2	0	2	2	2	2	2	X	1	3,453,547
	2	2	2	2	2	2	2	2	2	2	2	2	0	2	2	2	2	X	1	3,453,959
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	3,454,197
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	3,454,243
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	3,454,318
	2	2	2	2	0	0	2	0	2	2	2	2	2	0	2	0	0	X	1	3,455,310
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	0	X	1	3,456,671
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	0	X	1	3,456,688
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	0	X	1	3,456,695
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	3,458,502
	2	2	2	2	2	2	0	2	0	2	0	2	2	2	2	0	0	X	1	3,460,573
ENS::39496	2	2	2	0	2	2	2	2	2	0	0	2	2	0	2	0	0	X	1	3,461,048

block 3	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	C3H	C57	DBA	FVB	LGJ	LPJ	MRL	NZB	NZW		SMJ		BUB
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0		3,462,060

block 4	XXX	XXXX	129	AKR	B10	B/B	B/C	C3H	C57	DBA	MRL	NZB		A/H	A/J	NZW		BUB	FVB	LGJ	LPJ	SMJ
	8		2	2	2	2	2	2	2	2	2	2	X	1	1	1	X	0	0	0	0	0		8,858,687

block 5	XXX	XXXX	129	A/H	A/J	AKR	B10	BUB	C3H	DBA	FVB	LGJ	MRL	NZW	SMJ	B/C	LPJ		C57	NZB		B/B
Cacnb2	14		2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	2		14,915,186
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	X	1		14,922,981

block 6	XXX	XXXX	129	A/H	A/J	AKR	B10	BUB	C3H	C57	DBA	FVB	LGJ	LPJ	MRL	NZB	NZW	SMJ		B/B	B/C
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1		14,922,990

block 7	XXX	XXXX	AKR	B10	BUB	C57	DBA	FVB	LGJ	LPJ	MRL	NZB	NZW	SMJ	A/H	A/J	B/C		C3H		129	B/B
			2	2	2	2	2	2	2	2	2	2	2	2	0	2	2	X	1	X	0	0		14,937,403
			2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	X	0	0		14,937,512

block 8	XXX	XXXX	B/B	B/C	BUB	C3H	C57	LGJ	LPJ	MRL	NZB	NZW	SMJ	129		A/H	A/J	AKR	B10	DBA		FVB
Cacna1b	24		2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	0		24,565,485
			2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	X	0		24,565,634

block 9	XXX	XXXX	A/H	B10	B/B	B/C	BUB	C3H	LPJ	MRL	NZB	NZW	SMJ		129	FVB		A/J	AKR	C57	DBA	LGJ
			2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0		24,565,671

C3H	C57	MRL	SMJ	B/B	B/C	BUB	LGJ	NZB	NZW	129	LPJ		A/H	A/J	B10	AKR	DBA		FVB
2	2	2	2	2	2	2	2	2	2	0	2	X	0	0	0	0	0	X	1	24,565,700
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	2	24,566,633
2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	X	0	24,570,388
2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	X	0	24,570,389
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	2	24,577,509
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	2	24,577,613
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	2	24,577,823
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	0	24,592,101
2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	2	X	1	24,599,714
2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	X	1	24,608,092
2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	X	1	24,608,112
2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	X	1	24,608,122
2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	X	1	24,608,173
2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	X	1	24,608,178
2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	X	1	24,608,330
2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	X	1	24,608,334
2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	X	1	24,608,374
2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	X	1	24,608,503
2	2	2	2	2	2	2	2	0	2	2	0	X	1	1	1	1	1	X	1	24,608,560
1	1	1	1	0	0	0	0	1	1	0	0	X	2	2	2	2	2	X	2	24,608,645
2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	0	X	1	24,613,258
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	1	24,614,593
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	2	24,617,209
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	1	24,617,226
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	2	24,617,347
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	2	24,618,325
2	2	2	2	2	2	2	2	2	0	2	2	X	2	2	2	0	2	X	1	24,618,671

block 11	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	BUB	C3H	C57	DBA	FVB	LGJ	MRL	NZB	NZW	SMJ		LPJ
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1		24,618,906

129	B/C	C3H	C57	LGJ	NZB	NZW	B/B	BUB	SMJ	LPJ	MRL		AKR	B10	A/H	A/J	DBA		FVB
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	2	24,621,905
2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	2	X	1	24,622,122
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	2	24,637,707
2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	2	X	1	24,637,771
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	2	24,638,148
2	2	2	2	2	2	2	2	2	2	0	2	X	1	1	1	1	1	X	2	24,638,174
2	2	2	2	2	2	2	2	2	0	0	2	X	1	1	0	1	0	X	2	24,638,221
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	2	24,639,294
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	2	24,639,370
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	2	24,639,372
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	2	24,639,384
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	2	24,639,386
2	2	2	2	2	2	2	2	2	2	0	2	X	2	2	2	2	2	X	1	24,639,717
2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	2	X	1	24,639,719
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	1	24,645,645
2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	1	24,645,647
2	2	2	2	2	2	2	2	0	2	2	2	X	1	1	1	0	1	X	1	24,646,114
2	2	2	2	2	2	2	0	2	0	2	0	X	1	1	1	1	0	X	0	24,647,504
2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	X	1	24,650,661
2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	X	2	24,650,829

block 13	XXX	XXXX	129	AKR	B10	B/B	BUB	LGJ	LPJ		A/J	B/C	FVB	NZB		A/H	C3H	C57	DBA	MRL	NZW	SMJ
			2	2	2	2	2	2	2	X	1	1	1	1	X	0	0	0	0	0	0	0		24,656,873

BUB	C3H	C57	LGJ	NZW	B/B	NZB	MRL	SMJ	129	B/C	LPJ		B10	A/H	AKR	A/J	DBA		FVB
2	2	2	2	2	2	2	0	0	2	2	0	X	1	1	0	1	1	X	1	24,657,551
2	2	2	2	2	2	2	0	0	2	2	0	X	1	1	0	1	1	X	1	24,657,552
2	2	2	2	2	2	2	0	0	2	2	0	X	1	1	0	1	1	X	1	24,657,754
2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	2	X	1	24,657,811
2	2	2	2	2	2	0	2	2	2	2	0	X	1	1	1	1	1	X	2	24,657,858
2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	2	X	1	24,659,972
2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	2	X	1	24,660,247
2	2	2	2	2	0	2	2	2	0	0	0	X	1	1	1	0	0	X	0	24,665,975
2	2	2	2	2	2	2	2	2	0	0	0	X	1	1	1	0	0	X	0	24,665,987
2	2	2	2	2	2	2	2	2	0	0	0	X	1	1	1	0	1	X	1	24,665,997
2	2	2	2	2	2	2	2	2	0