Chromosome 3 Haplotype

Chromosome 3

Run ID: 3287 Total SNPs: 1318 Total Blocks: 248 Coverage: .8 Minimum Strains: 9

XXX	129	A/J	AKR	B10	B/B	B/C	LGJ	LPJ	MRL	SMJ	A/H	C3H	C57	FVB	NZB	NZW	DBA		BUB
3	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	3,512,262
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	3,512,283
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	3,512,305
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	3,512,339
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	3,512,444
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	3,512,526
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	3,512,791
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	3,513,120
	2	2	2	2	2	2	2	2	2	2	2	0	2	2	0	0	2	X	1	3,513,172
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	3,513,506
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	3,513,603
	2	2	2	2	2	2	2	2	2	2	0	2	0	0	2	2	0	X	1	3,513,915
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	3,513,946
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	3,514,232
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	3,514,240

block 2	129	A/J	AKR	B10	B/B	B/C	BUB	C3H	C57	DBA	LGJ	LPJ	MRL	NZB	NZW	A/H	FVB		SMJ
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	3,514,329
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	3,514,330
Hnf4g	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	3,514,541

block 3	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	C57	DBA	FVB	LGJ	LPJ	MRL	NZW	SMJ	C3H	NZB		BUB
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1		3,514,798
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1		3,514,805

block 4	XXX	XXXX	A/H	A/J	AKR	C3H	C57	DBA	LPJ	MRL	NZB	NZW		FVB	SMJ		129	B10	B/B	B/C	BUB	LGJ
			2	2	2	2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0	0		3,514,820

129	A/H	A/J	AKR	B10	B/B	B/C	C57	DBA	FVB	LGJ	LPJ	MRL	NZW	BUB	C3H	NZB		SMJ
2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	2	X	1	3,514,939
2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	2	X	1	3,514,944
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	3,514,947
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	3,514,988

block 6	XXX	XXXX	129	A/H	A/J	AKR	B/B	B/C	DBA	FVB	NZW		BUB	SMJ	C3H	LPJ		NZB		B10	C57	LGJ	MRL
			2	2	2	2	2	2	0	0	0	X	1	1	0	0	X	2	X	0	0	0	0		3,644,237
			2	2	0	0	0	0	2	2	2	X	1	1	1	1	X	1	X	0	0	0	0		3,644,262

129	A/J	AKR	B10	C57	DBA	LPJ	MRL	NZW	A/H	B/B	FVB	LGJ	B/C	C3H	NZB		SMJ	BUB
2	2	2	2	2	2	2	2	2	2	2	0	2	2	2	2	X	1	1	3,644,277
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	3,644,299
2	2	2	2	2	2	2	2	2	0	0	2	2	0	0	0	X	1	0	3,644,486
2	2	2	2	2	2	2	2	2	2	2	2	0	0	0	0	X	1	0	3,644,488

block 8	XXX	XXXX	A/J	AKR	FVB	LGJ	NZW	A/H	B10	B/B	C57	DBA	LPJ	MRL		BUB	SMJ	B/C		C3H	NZB		129
			2	2	2	2	2	2	2	0	2	2	2	2	X	1	1	1	X	1	1	X	0		3,644,491
			2	2	2	2	2	0	0	2	0	0	0	0	X	2	2	0	X	1	1	X	0		3,649,068

129	A/H	AKR	B10	B/B	B/C	C57	FVB	LGJ	MRL	NZB	A/J	LPJ	NZW	C3H	DBA		BUB		SMJ
2	2	2	2	2	2	0	0	0	0	2	0	0	0	2	0	X	2	X	1	3,649,365
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	X	1	3,649,450
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	X	2	3,651,139
2	2	2	2	2	2	2	2	2	2	2	0	2	2	0	0	X	1	X	2	3,651,314
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	X	1	3,651,431
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	1	3,654,142
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	X	1	3,657,515
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	1	3,657,632
2	2	2	2	2	2	2	2	2	2	0	2	2	2	0	2	X	0	X	1	3,657,765
2	2	2	2	2	2	2	2	2	2	2	2	0	0	0	2	X	1	X	1	3,658,025

block 10	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	BUB	C3H	C57	FVB	LGJ	LPJ	MRL	NZB	SMJ		DBA		NZW
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0		3,658,092

129	A/J	B10	B/B	C3H	C57	DBA	NZB	A/H	AKR	FVB	LPJ	MRL	B/C	LGJ	NZW		BUB		SMJ
2	2	2	2	2	2	2	2	2	2	0	2	2	2	2	0	X	2	X	1	3,658,261
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	X	1	3,658,262
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	3,658,419
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	1	3,658,436
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	X	1	3,658,942
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	3,659,093
2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	0	X	1	3,663,332
2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	0	X	1	3,663,349
2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	0	X	1	3,663,417
2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	2	X	1	X	1	3,664,062
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	X	2	3,664,102
2	2	2	2	2	2	2	2	0	2	2	2	2	0	2	2	X	1	X	2	3,664,110
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	3,664,124
2	2	2	2	2	2	2	2	2	0	2	0	0	0	0	0	X	1	X	2	3,664,132

block 12	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	C3H	C57	NZB	NZW		DBA	MRL		BUB	FVB	LGJ	LPJ	SMJ
Pkia	7		2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0		7,466,847

block 13	129	B10	C57	LPJ	NZB	NZW	A/H		AKR	B/C	BUB	C3H	DBA	B/B		A/J	FVB	LGJ	MRL	SMJ
Il7	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	1	1	1	1	7,636,794
	1	1	1	1	1	1	0	X	2	2	2	2	2	0	X	2	2	2	2	0	7,636,975
	2	2	2	2	2	2	0	X	2	2	2	2	2	0	X	1	1	1	1	1	7,638,310

block 14	XXX	XXXX	129	A/J	B/B	B/C	DBA	LGJ	LPJ	NZB	NZW	SMJ	A/H	B10	C57	FVB		AKR	C3H	MRL		BUB
Pgk2			2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	X	0		7,885,659
	8		2	2	2	2	2	2	2	2	2	2	0	0	0	2	X	2	2	2	X	1		8,704,238

block 15	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	BUB	C3H	C57	DBA	FVB	LGJ	LPJ	MRL	NZW		SMJ		NZB
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0		8,704,434

block 16	XXX	A/J	B/B	B/C	BUB	C3H	DBA	SMJ	C57	A/H	B10		129	AKR	FVB	LGJ	LPJ	MRL	NZB	NZW
Pmp2	10	2	2	2	2	2	2	2	2	0	2	X	1	1	1	1	1	1	1	0	10,240,683
		2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	1	1	1	10,242,776
		2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	1	1	1	10,242,777
		2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	1	1	10,243,018
		1	1	1	1	1	1	1	0	0	1	X	2	2	2	2	2	2	2	2	10,243,050

block 17	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	C3H	C57	MRL	NZB	NZW		DBA		BUB	FVB	LGJ	LPJ	SMJ
	14		2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0	0		14,707,885

block 18	XXX	XXXX	AKR	B10	B/C	C57	DBA	MRL	NZB	NZW		A/H	A/J	C3H		129	B/B	BUB	FVB	LGJ	LPJ	SMJ
	19		2	2	2	2	2	2	2	2	X	1	1	1	X	0	0	0	0	0	0	0		19,369,785

block 19	129	A/H	A/J	B10	B/B	B/C	C57	LGJ	LPJ	NZB	NZW	AKR	DBA	MRL		C3H		SMJ		BUB	FVB
	2	2	2	2	2	2	2	2	2	2	2	0	2	2	X	1	X	2	X	0	0	19,889,531
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0	0	19,889,568
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0	0	19,889,581
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0	0	19,889,613
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0	0	19,889,632
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0	0	19,889,637
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0	0	19,889,638
Cpa3	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0	0	19,889,740
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0	0	19,889,830
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0	0	19,889,856
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0	0	19,889,861
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0	0	19,891,457
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0	0	19,891,490
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0	0	19,891,572
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0	0	19,891,607
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0	0	19,893,116
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0	0	19,893,203
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0	0	19,893,204
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0	0	19,893,254
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0	0	19,893,255
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0	0	19,893,327
	2	2	2	2	2	2	2	2	2	2