Chromosome 4 Haplotype

Chromosome 4

Run ID: 3288 Total SNPs: 1661 Total Blocks: 256 Coverage: .8 Minimum Strains: 9

block 1	XXX	XXXX	129	AKR	B/B	B/C	C3H	DBA	MRL		A/H	A/J	C57	NZB	NZW		B10	BUB	FVB	LGJ	LPJ	SMJ
Car8	8		2	2	2	2	2	2	2	X	1	1	1	1	1	X	0	0	0	0	0	0		8,073,047

block 2	XXX	XXXX	129	A/J	AKR	B/C	BUB	DBA	FVB	MRL	B/B	C3H	LGJ	LPJ	NZB	NZW	SMJ		B10	C57		A/H
Cngb3	19		2	2	2	2	2	2	2	2	0	0	0	0	0	0	0	X	2	0	X	1		19,432,627
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	2		19,437,110

block 3	XXX	XXXX	A/H	A/J	AKR	B10	B/B	B/C	C3H	DBA	MRL	NZB	NZW		C57		129	BUB	FVB	LGJ	LPJ	SMJ
			2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0	0	0		19,965,713

block 4	129	A/J	DBA	LGJ	LPJ	MRL	SMJ	FVB	NZW	B/B	B/C		NZB
Ggh	2	2	2	2	2	2	2	0	2	2	0	X	1	X	19,979,380
	2	2	2	2	2	2	2	2	2	2	0	X	1	X	19,979,485
	2	2	2	2	2	2	2	2	2	0	0	X	1	X	19,980,634
	2	2	2	2	2	2	2	2	2	2	2	X	1	X	19,980,728
	2	2	2	2	2	2	2	2	2	0	2	X	1	X	19,980,873
	2	2	2	2	2	2	2	2	2	2	0	X	1	X	19,980,887
	2	2	2	2	2	2	2	2	2	2	0	X	1	X	19,980,888
	2	2	2	2	2	2	2	2	2	0	0	X	1	X	19,980,966
	2	2	2	2	2	2	2	2	2	2	0	X	1	X	19,980,993
	2	2	2	2	2	2	2	2	2	0	0	X	1	X	19,984,676
	2	2	2	2	2	2	2	2	2	2	2	X	1	X	19,984,787
	2	2	2	2	2	2	2	2	2	2	2	X	1	X	19,984,838
	2	2	2	2	2	2	2	2	2	2	2	X	1	X	19,984,900
	2	2	2	2	2	2	2	2	2	2	2	X	1	X	19,984,908
	2	2	2	2	2	2	2	2	0	0	2	X	1	X	19,984,915
	2	2	2	2	2	2	2	2	2	2	2	X	1	X	19,984,935
	2	2	2	2	2	2	2	2	2	2	0	X	1	X	19,991,378

XXX	A/H	A/J	AKR	B10	B/B	C57	LGJ	LPJ	MRL	NZB	NZW	129	B/C		C3H	DBA	FVB	SMJ	BUB
33	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	1	1	0	33,292,675
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,293,414
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,293,503

block 6	XXX	XXXX	A/J	B/B	C3H	C57	FVB	LGJ	LPJ	MRL	NZB	NZW	B10	B/C	BUB	SMJ		A/H		AKR		129	DBA
			2	2	2	2	2	2	2	2	2	2	2	0	2	0	X	1	X	2	X	0	0		33,293,670
			2	2	2	2	2	2	2	2	2	2	0	2	0	2	X	0	X	1	X	0	0		33,293,742

DBA	FVB	A/J	B10	C3H	LGJ	MRL	SMJ	C57	LPJ	NZB	B/C	NZW		BUB	129	A/H	AKR	B/B
2	2	2	2	2	2	2	2	2	0	2	2	0	X	0	1	0	0	0	33,293,759
2	2	0	2	2	0	0	0	2	0	0	0	0	X	1	1	1	1	0	33,293,778
2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	0	0	0	1	33,293,956
2	2	2	0	2	2	2	2	0	2	2	0	0	X	1	0	0	0	0	33,293,974
2	2	2	2	0	2	2	2	0	2	0	0	0	X	1	0	0	0	0	33,293,991

block 8	B10	B/B	C57	LGJ	LPJ	MRL	NZB	NZW	A/H	B/C	129	AKR	A/J		BUB	C3H	DBA	FVB	SMJ
Gabrr2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,312,934
	2	2	2	2	2	2	2	2	2	2	0	2	2	X	1	1	1	1	1	33,312,935
	2	2	2	2	2	2	2	2	0	0	0	0	0	X	1	1	1	1	1	33,313,481
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,313,534
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,313,545
	2	2	2	2	2	2	2	2	0	2	2	2	0	X	1	1	1	1	1	33,313,571
	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	1	1	1	33,313,608
	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	1	1	1	33,313,827
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,313,904
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,313,948
	2	2	2	2	2	2	2	2	2	0	2	2	2	X	1	1	1	1	1	33,313,969
	2	2	2	2	2	2	2	2	2	0	2	2	2	X	1	1	1	1	1	33,313,972
	2	2	2	2	2	2	2	2	2	2	0	2	2	X	1	1	1	1	1	33,317,064
	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	33,317,065
	2	2	2	2	2	2	2	2	2	2	0	0	2	X	1	1	1	1	1	33,317,113
	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	33,317,114
	2	2	2	2	2	2	2	2	2	2	0	0	2	X	1	1	1	1	1	33,317,169
	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	33,317,170
	2	2	2	2	2	2	2	2	2	2	0	0	2	X	1	1	1	1	1	33,317,182
	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	33,317,183
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,326,762

block 9	XXX	XXXX	B10	BUB	C3H	C57	DBA	FVB	LPJ	NZB	NZW	SMJ		129	A/H	A/J	AKR	B/B	B/C	LGJ	MRL
			2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	1	1		33,326,949

B10	B/C	C57	LGJ	LPJ	MRL	NZB	NZW	129	AKR	B/B	A/H	A/J		C3H	DBA	FVB	SMJ	BUB
2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,327,059
2	2	2	2	2	2	2	2	2	2	0	2	2	X	1	1	1	1	1	33,327,104
2	2	2	2	2	2	2	2	2	0	0	2	2	X	1	1	1	1	1	33,327,105
2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	1	1	1	33,327,295
2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	1	1	0	33,327,437
2	2	2	2	2	2	2	2	0	2	2	0	0	X	1	1	1	1	0	33,327,515
2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,362,197

block 11	XXX	XXXX	129	A/H	A/J	AKR	B/B	B/C	BUB	C3H	DBA	FVB	LGJ	MRL	SMJ		B10	LPJ	NZB	NZW		C57
			2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	X	0		33,362,215

block 12	A/J	B/B	LPJ	NZW	AKR	B/C	LGJ	MRL	NZB	A/H	B10	C57	129		BUB	C3H	DBA	SMJ	FVB
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,362,247
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,362,329
	2	2	2	2	2	2	2	2	0	2	2	2	2	X	1	1	1	1	1	33,362,457
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,362,602
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,362,705
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,362,742
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,362,773
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,362,856
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,362,862
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,362,864
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,362,881
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,362,888
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,362,889
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,362,891
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,362,892
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,362,894
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,362,923
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,362,928
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,362,958
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,362,991
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	0	33,363,035
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,363,069
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,363,073
	2	2	2	2	2	0	2	2	2	2	0	0	2	X	1	1	1	1	0	33,363,126
	2	2	2	2	0	2	0	2	2	0	2	2	2	X	1	1	1	1	1	33,363,225
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,363,466
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,363,494
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,363,495
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,363,497
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,363,503
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,363,510
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,363,552
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,363,564
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	33,363,574
	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	33,363,654
	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	33,363,710
	2	2	2	2	2	2	2	0	2	0	0	0	2	X	1	1	1	1	1	33,363,732
Gabrr1	2	2	2	2	2	2