Chromosome 5 Haplotype

Chromosome 5

Run ID: 3289 Total SNPs: 2466 Total Blocks: 291 Coverage: .8 Minimum Strains: 9

block 1	XXX	129	AKR	B10	B/C	C57	LGJ	LPJ	MRL	NZW	B/B	NZB	SMJ	FVB		A/H	A/J	C3H	DBA		BUB
	4	2	2	2	2	2	2	2	2	2	2	2	0	2	X	2	2	2	2	X	1	4,086,566
		2	2	2	2	2	2	2	2	2	0	2	0	0	X	2	2	2	2	X	1	4,086,671
		2	2	2	2	2	2	2	2	2	2	0	2	0	X	1	1	1	1	X	2	4,087,065
		2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1	4,087,133
Cyp51		2	2	2	2	2	2	2	2	2	2	2	2	0	X	2	2	2	2	X	1	4,087,164
		2	2	2	2	2	2	2	2	2	2	2	2	0	X	2	2	2	2	X	1	4,087,720
		2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	X	1	4,087,735
		2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1	4,087,752
		2	2	2	2	2	2	2	2	2	2	2	2	0	X	2	2	2	2	X	1	4,087,773

block 2	XXX	XXXX	A/H	A/J	AKR	B10	C3H	C57	DBA	LGJ	MRL	NZB	NZW		129	B/B	B/C	BUB	LPJ	SMJ		FVB
			2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	X	0		4,087,788

129	A/H	A/J	AKR	B10	B/B	B/C	C3H	C57	DBA	FVB	LGJ	LPJ	MRL	NZB	NZW	SMJ		BUB
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	4,087,888
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	4,087,889
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	4,087,891

block 4	XXX	XXXX	AKR	B10	BUB	C57	FVB	LGJ	MRL	NZB	NZW		129	B/B	B/C	LPJ		A/H	A/J	C3H	DBA		SMJ
			2	2	2	2	2	2	2	2	2	X	1	1	1	1	X	1	1	1	1	X	2		4,088,161
			2	2	2	2	2	2	2	2	2	X	1	1	1	1	X	2	2	2	2	X	1		4,088,303

129	A/H	A/J	B/B	B/C	C3H	DBA	LPJ	SMJ	FVB		AKR	B10	C57	LGJ	MRL	NZB	NZW		BUB
2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	2	X	1	4,088,675
2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	1	1	X	2	4,088,863
2	2	2	2	2	2	2	2	2	0	X	2	2	2	2	2	2	2	X	1	4,089,032
2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	1	1	X	2	4,089,078
2	2	2	2	2	2	2	2	0	2	X	2	2	2	2	2	2	2	X	1	4,093,536

block 6	XXX	XXXX	129	A/H	A/J	AKR	B10	B/C	BUB	C3H	C57	DBA	FVB	LGJ	LPJ	MRL	NZB	NZW	SMJ		B/B
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1		4,093,919

block 7	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	C3H	C57	DBA	FVB	LGJ	LPJ	MRL	NZB	NZW	SMJ		BUB
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1		4,094,048
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1		4,094,077

block 8	XXX	XXXX	A/H	A/J	AKR	B10	BUB	C3H	C57	DBA	FVB	LGJ	MRL	NZB	NZW		129	B/B	B/C	LPJ	SMJ
			2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1		4,097,810

129	A/H	A/J	AKR	B10	B/B	B/C	C3H	C57	DBA	LGJ	LPJ	MRL	NZB	NZW	SMJ	FVB		BUB
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	4,098,142
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	4,098,158
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	4,098,218
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	4,098,345
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	4,105,959
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	4,106,019
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	4,106,133
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	4,106,157
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	4,106,384
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	4,106,386
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	4,107,153
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	4,107,240
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	4,107,453
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	4,107,483
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	4,107,560
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	4,108,776

block 10	XXX	XXXX	129	AKR	B10	B/B	B/C	C57	FVB	LGJ	LPJ	MRL	NZB	NZW	SMJ		A/H	A/J	C3H	DBA		BUB
			2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	X	2		4,108,907
			2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1		4,108,911

block 11	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	C3H	C57	DBA	LGJ	LPJ	MRL	NZB	NZW	FVB		BUB	SMJ
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1		4,108,939
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1		4,108,954

block 12	XXX	XXXX	129	AKR	B10	B/B	B/C	BUB	C57	FVB	LGJ	LPJ	MRL	NZB	NZW		A/H	A/J	C3H	DBA		SMJ
			2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	X	0		4,108,963

129	A/H	A/J	AKR	B10	B/B	B/C	C3H	C57	DBA	LGJ	LPJ	MRL	NZB	NZW	FVB		BUB		SMJ
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	4,109,017
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	X	2	4,109,019
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	X	1	4,110,316
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	X	1	4,110,446
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	4,110,524
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	X	2	4,110,529
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	X	1	4,110,572

129	A/H	A/J	AKR	B10	B/B	B/C	C3H	C57	DBA	LGJ	LPJ	MRL	NZW	NZB	SMJ	FVB		BUB
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	4,110,597
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	4,110,628
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	4,110,667
2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	2	X	1	4,111,131
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	4,111,536
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	4,111,829
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	4,111,952
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	4,111,968
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	4,112,098
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	4,112,119
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	4,112,361
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	4,112,371

block 15	XXX	XXXX	129	B10	B/C	C57	NZB		MRL	A/J	NZW	SMJ		AKR	DBA	LGJ		A/H	B/B	BUB	C3H	FVB	LPJ
Hspa1b	5		2	2	2	2	2	X	1	1	1	1	X	2	0	0	X	0	0	0	0	0	0		5,788,941
			2	2	2	2	2	X	1	0	0	0	X	1	1	1	X	0	0	0	0	0	0		5,789,055

block 16	XXX	XXXX	AKR	B10	B/B	B/C	C57	NZB	NZW	129		A/J	C3H	DBA	MRL	A/H		BUB	FVB	LGJ	LPJ	SMJ
	7		2	2	2	2	2	2	2	0	X	1	1	1	1	1	X	0	0	0	0	0		7,172,255
			2	2	2	2	2	2	2	2	X	1	1	1	1	0	X	0	0	0	0	0		7,172,328

block 17	XXX	A/J	DBA	MRL	B/C	C57	A/H	B10	B/B	LGJ	C3H		LPJ	NZW	NZB	129		AKR	SMJ		BUB	FVB
Abcb1a	8	2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1	1	X	0	0	8,703,996
		2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1	1	X	0	0	8,704,079
		2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1	1	X	0	0	8,704,128
		2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1	1	X	0	0	8,704,275
		2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1	1	X	0	0	8,704,290
		2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	X	2	2	X	0	0	8,799,450
		2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	X	1	1	X	0	0	8,799,463
		2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	X	1	1	X	0	0	8,799,464
Abcb1b		2	2	2	2	2	2	2	2	0	0	X	1	1	1	1	X	1	1	X	0	0	8,799,614
		2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	X	1	1	X	0	0	8,799,615
		2	2	2	2	2	2	2	2	2	0	X	2	2	2	2	X	1	1	X	0	0	8,799,623
		2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1	1	X	0	0	8,799,624
		2	2	2	2	2	2	2	2	2	0	X	2	2	2	2	X	1	1	X	0	0	8,799,746
		2	2	2	2	2	2	2	2	2	0	X	2	2	2	2	X	1	1	X	0	0	8,799,747
		2	2	2	2	2	2	2	2	2	0	X	2	2	0	2	X	1	1	X	0	0	8,799,753
		2	2	2	2	2	2	2	2	2	0	X	2	2	0	2	X	1	1	X	0	0	8,799,754
		2	2	2	2	2	2	2	2	2	0	X	2	2	2	2	X	1	1	X	0	0	8,799,955
		2	2	2	2	2	2	2	2	2	0	X	2	2	2	2	X	1	1	X	0	0	8,799,962
		2	2	2	2	0	2	2	2	2	0	X	1	1	1	1	X	2	2	X	0	0	8,800,039
		2	2	2	2	2	2	2	0	2	2	X	1	1	1	1	X	2	0	X	0	0	8,800,046
		2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1	1	X	0	0	8,807,169
		2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1	1	X	0	0	8,807,249
		2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1	1	X	0	0	8,807,300
		2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1	1	X	0	0	8,807,633
		2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1	1	X	0	0	8,807,674
		2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1	1	X	0	0	8,807,717
		2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1	1