Chromosome 6 Haplotype

Chromosome 6

Run ID: 3290 Total SNPs: 2748 Total Blocks: 351 Coverage: .8 Minimum Strains: 9

block 1	XXX	XXXX	A/J	AKR	B/B	B/C	C3H	DBA	MRL	NZW	A/H		129	NZB		B10	C57		BUB	FVB	LGJ	LPJ	SMJ
Lrp12	17		2	2	2	2	2	2	2	2	0	X	2	2	X	1	1	X	0	0	0	0	0		17,466,134
	18		2	2	2	2	2	2	2	2	2	X	1	1	X	2	2	X	0	0	0	0	0		18,129,605

block 2	XXX	129	A/H	A/J	AKR	B10	B/B	B/C	BUB	C3H	C57	DBA	FVB	LPJ	NZB	SMJ	MRL		LGJ	NZW
	21	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	21,027,502
		2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	21,027,723
Kcnd2		2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	21,028,247

129	A/H	A/J	AKR	B10	B/B	B/C	BUB	DBA	FVB	LGJ	LPJ	MRL	NZB	NZW	SMJ		C3H		C57
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	0	X	1	21,539,572
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	X	1	21,539,902
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	21,539,962
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	21,539,963

block 4	XXX	B10	DBA	LGJ	MRL	NZW	SMJ	129	B/B	LPJ	A/J	AKR	BUB	C57	FVB	A/H	C3H		B/C		NZB
	29	2	2	2	2	2	2	2	2	2	2	0	0	0	2	0	0	X	1	X	2	29,204,916
		2	2	2	2	2	2	2	2	2	0	2	2	2	2	2	0	X	0	X	1	29,204,963
		2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	X	1	29,206,066
		2	2	2	2	2	2	2	0	0	2	0	0	0	0	0	0	X	1	X	0	29,206,390
Calu		2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	X	1	29,214,734
		2	2	2	2	2	2	0	2	2	0	2	2	2	0	0	2	X	2	X	1	29,214,736

block 5	XXX	XXXX	BUB	B10	B/B	C3H	C57	DBA	MRL	NZB	NZW	SMJ		129	A/J	A/H	AKR	B/C	FVB	LPJ		LGJ
			2	2	2	2	2	2	2	2	2	2	X	1	1	0	0	0	0	0	X	2		29,214,843
			2	0	0	0	0	0	0	0	0	0	X	2	2	2	2	2	2	2	X	1		29,214,915

block 6	XXX	XXXX	AKR	B10	B/B	B/C	BUB	C3H	DBA	FVB	LGJ	LPJ	NZB	SMJ		NZW		129	A/H	A/J	C57	MRL
			2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0	0		29,219,993

block 7	A/H	C3H	LGJ	MRL	NZW	129	A/J	AKR	B/C	BUB	DBA	FVB	LPJ	B/B	SMJ	B10	C57		NZB
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	29,224,307
	2	2	2	2	2	0	0	0	0	2	2	0	0	0	2	2	2	X	1	29,225,363
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	29,233,502
	2	2	2	2	2	2	2	2	2	2	0	2	2	2	2	2	2	X	1	29,234,114
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	29,234,822
Opn1sw	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	29,235,644
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	0	X	1	29,235,645
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	29,235,731
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	0	X	1	29,235,732
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	29,235,741
	2	2	2	2	2	2	2	2	2	0	2	2	2	0	0	0	0	X	1	29,235,742

block 8	XXX	XXXX	129	A/J	AKR	B10	B/B	B/C	C3H	LGJ	LPJ	MRL		SMJ		A/H	BUB	C57	DBA	FVB	NZB	NZW
	30		2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0	0	0	0		30,494,703

block 9	129	A/H	A/J	AKR	B10	B/B	B/C	C3H	LGJ	LPJ	SMJ	NZW	NZB	C57		DBA
ENS::29788	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	X	30,498,618
	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	X	30,498,718
	2	2	2	2	2	2	2	2	2	2	2	0	0	0	X	1	X	30,498,740
	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	X	30,498,758
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	30,498,772
	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	X	30,498,795
	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	X	30,498,799

block 10	XXX	XXXX	A/J	AKR	B10	B/B	C3H	C57	MRL	SMJ	A/H	B/C	LGJ	LPJ	NZB		DBA		NZW		129	BUB	FVB
			2	2	2	2	2	2	2	2	0	2	0	0	2	X	0	X	1	X	0	0	0		30,512,691
			2	2	2	2	2	2	2	2	2	0	2	2	0	X	1	X	2	X	0	0	0		30,513,613

block 11	XXX	XXXX	129	A/H	AKR	B10	B/C	NZW	SMJ		C57	DBA		A/J	B/B	BUB	C3H	FVB	LGJ	LPJ	MRL	NZB
			2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0	0	0	0	0		30,513,737

block 12	XXX	XXXX	129	A/H	A/J	AKR	B/B	B/C	C3H	C57	DBA	LPJ	MRL	NZB		NZW		B10	BUB	FVB	LGJ	SMJ
	34		2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0	0		34,215,662

block 13	XXX	XXXX	129	A/H	A/J	AKR	B/B	B/C	C3H	MRL		B10	C57	DBA	NZB	NZW		BUB	FVB	LGJ	LPJ	SMJ
	35		2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	0	0	0	0	0		35,934,640

block 14	XXX	129	A/J	C3H	C57	LPJ	AKR	LGJ	NZW	MRL	SMJ	DBA	NZB		B/C	A/H	B10	B/B		BUB	FVB
Ephb6	41	2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1	1	41,544,091
		2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1	1	41,576,252
		2	2	2	2	2	2	2	2	2	2	2	0	X	2	2	2	2	X	1	1	41,606,022
		2	2	2	2	2	2	2	2	2	2	2	0	X	2	2	2	2	X	1	1	41,606,140
Casp2	42	2	2	2	2	2	2	0	2	2	0	0	0	X	0	0	1	0	X	0	0	42,205,387
		2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1	1	42,216,562
		2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1	1	42,216,976
		2	2	2	2	2	2	2	0	0	0	0	0	X	1	0	0	0	X	2	2	42,217,214
		2	2	2	2	2	2	2	2	2	2	0	2	X	2	2	2	0	X	1	1	42,217,215
		2	2	2	2	2	0	2	2	0	2	0	0	X	1	1	0	0	X	0	0	42,217,559

block 15	129	A/H	A/J	AKR	B10	C3H	C57	DBA	LGJ	LPJ	NZW	SMJ	NZB	B/C	MRL	B/B		FVB	BUB
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	42,217,728
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	42,218,002
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	42,222,317
Clcn1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	1	42,223,149
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	42,227,791
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	42,228,384
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	42,228,655
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	42,230,587
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	0	42,234,574
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	42,234,631
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	42,234,632
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	42,234,780
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	42,234,781
	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	0	X	1	1	42,235,064
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	1	42,237,101
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	1	42,237,242
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	42,241,513
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	42,242,185
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	42,243,850
	2	2	2	2	2	2	2	2	2	2	2	2	0	2	2	2	X	1	1	42,244,445
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	0	42,249,812
	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	2	X	1	0	42,250,406

block 16	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	BUB	C3H	C57	DBA	FVB	LGJ	LPJ	NZB	NZW	SMJ		MRL
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1		42,250,680

A/H	A/J	B10	C3H	C57	LGJ	LPJ	MRL	NZB	SMJ	B/B	NZW	B/C		129	AKR	DBA		FVB	BUB
2	2	2	2	2	2	2	2	2	2	2	0	2	X	2	2	2	X	1	1	42,251,471
2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	0	0	X	2	0	42,252,038
2	2	2	2	2	2	2	2	2	2	0	2	2	X	2	2	2	X	1	1	42,253,064

block 18	XXX	XXXX	A/H	A/J	AKR	B10	B/B	B/C	BUB	C57	DBA	FVB	LGJ	LPJ	NZW	SMJ	C3H		129		NZB		MRL
	50		2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	1	X	0		50,245,992
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	X	2	X	0		50,246,058

block 19	XXX	XXXX	A/J	AKR	BUB	C3H	DBA	NZB	NZW		129	C57	FVB		A/H	B10	B/B	B/C	LGJ	LPJ	MRL	SMJ
			2	2	2	2	2	2	2	X	1	1	1	X	0	0	0	0	0	0	0	0		50,246,426

block 20	129	B/B	B/C	C57	NZW	BUB	LGJ	B10	DBA	LPJ	A/J	AKR	SMJ	FVB	MRL	C3H		NZB
Osbpl3	2	2	2	2	2	0	0	2	0	0	2	0	0	0	0	2	X	1	X	50,246,861
	2	2	2	2	2	2	2	2	0	0	0	0	0	0	0	0	X	1	X	50,248,849
	2	2	2	2	2	2	2	2	2	2	0	0	2	0	0	0	X	1	X	50,248,910
	2	2	2	2	2	2	2	2	2	2	0	2	0	2	0	0	X	1	X	50,248,924
	2	2	2	2	2	2	2	2	2	2	2	0	0	0	0	0	X	1	X	50,248,939
	2	2	2	2	2	2	2	0	2	2	2	2	2	0	2	0	X	1	X	50,248,964
	2	2	2	2	2	2	2	0	2	2	2	2	2	2	2	0	X	1	X	50,248,975

block 21	XXX	XXXX	129	A/J	B/B	B/C	BUB	C57	DBA	FVB	LGJ	LPJ	MRL	NZB	NZW	SMJ		C3H		A/H	AKR	B10
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0		50,249,007

B/B	B10	B/C	LGJ	NZW	FVB	DBA	AKR	C57	C3H	A/H	A/J	BUB	LPJ	SMJ		129	MRL		NZB
2	2	2	2	2	2	2	0	0	0	0	0	2	2	0	X	2	0	X	1	50,249,203
2	0	2	2	2	2	2	2	0	0	0	0	2	2	2	X	1	0	X	2	50,249,244
2	0	2	2	2	2	2	2	2	0	0	2	2	2	2	X	2	2	X	1	50,249,256
2	2