Chromosome 9 Haplotype

Chromosome 9

Run ID: 3293 Total SNPs: 2764 Total Blocks: 356 Coverage: .8 Minimum Strains: 9

block 1	XXX	A/H	A/J	B10	C3H	C57	DBA	FVB	MRL	SMJ	B/B	B/C	BUB	LGJ		LPJ	NZB	NZW		129	AKR
Gria4	4	2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	1	1	X	1	1	4,398,006
		2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	X	1	1	4,429,211
		2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	X	1	1	4,429,367
		2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	X	1	1	4,429,629
		2	2	2	2	2	2	2	2	2	2	0	2	0	X	1	1	1	X	1	1	4,445,513
		2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	X	1	1	4,463,592
		2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	X	2	2	4,720,687
		2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	X	1	1	4,720,736
		2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	X	1	1	4,721,630
		2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	X	1	1	4,721,731
		2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	X	1	1	4,722,228
		2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	X	1	1	4,722,891
		2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	X	1	1	4,722,915
		2	2	2	2	2	2	2	2	2	0	2	2	2	X	2	2	2	X	1	1	4,723,153

block 2	XXX	XXXX	129	A/H	DBA	FVB	LGJ	NZW	SMJ		B10	B/C	BUB		A/J	AKR	B/B	C3H	C57	LPJ	MRL	NZB
			2	2	2	2	2	2	2	X	1	1	1	X	0	0	0	0	0	0	0	0		4,723,805

block 3	XXX	A/H	A/J	B10	B/B	B/C	BUB	C3H	C57	DBA	FVB	LGJ	LPJ	MRL	NZB	NZW	SMJ		129		AKR
	5	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	1	5,226,491
		2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	1	5,226,546
Casp1		2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	X	1	5,232,257
		2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	1	5,232,287

block 4	XXX	XXXX	129	A/J	AKR	B10	B/B	B/C	C3H	C57	DBA	LGJ	LPJ	MRL	NZB	NZW	SMJ		A/H		BUB	FVB
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0		5,232,738

block 5	A/H	A/J	B10	BUB	C3H	C57	FVB	MRL	NZB	LPJ	B/B	DBA	LGJ	B/C	NZW	SMJ		129	AKR
	2	2	2	2	2	2	2	2	2	2	2	0	0	2	0	2	X	1	1	5,233,140
Casp4	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	5,252,390
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	5,252,392
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	5,252,406
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	5,252,408
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	5,252,554
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	5,252,556
	2	2	2	2	2	2	2	2	2	2	0	2	2	2	2	2	X	1	1	5,274,220
Casp12	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	5,275,879
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	5,275,974
	2	2	2	2	2	2	2	2	2	0	2	2	2	0	2	2	X	0	1	5,278,401
	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	2	X	1	0	5,278,519
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	5,279,599
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	5,279,635
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	5,279,664
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	5,281,680
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	5,282,780
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	5,282,891
	2	2	2	2	2	2	2	2	2	2	0	2	2	0	2	2	X	1	1	5,287,722
	2	2	2	2	2	2	2	2	2	2	2	0	0	2	0	0	X	1	1	5,287,724

block 6	XXX	XXXX	129	C57	DBA	FVB	LPJ	MRL	NZW	SMJ		B10	BUB		A/H	A/J	AKR	B/B	B/C	C3H	LGJ	NZB
ENS::50578	7		2	2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0	0	0	0		7,249,997

FVB	LPJ	NZW	B10	C3H	MRL	SMJ	NZB		A/H	A/J	B/B	AKR	B/C	LGJ
1	1	1	0	0	0	0	0	X	2	2	2	2	2	2	X	7,256,392
2	2	2	2	2	2	2	2	X	1	1	1	0	0	0	X	7,256,422
2	2	2	2	2	2	2	0	X	1	1	1	1	1	0	X	7,256,451

block 8	XXX	XXXX	129	B/C	BUB	C57	DBA	FVB	MRL	SMJ	A/H	A/J	AKR	B10	B/B	NZB	NZW		C3H		LGJ		LPJ
Mmp3			2	2	2	2	2	2	2	2	0	0	0	0	0	0	0	X	1	X	1	X	0		7,425,215
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0		7,426,439

129	A/H	B10	B/C	LGJ	SMJ	DBA		AKR	LPJ	MRL	NZB
2	2	2	2	2	2	2	X	1	1	1	1	X	7,675,565
2	2	2	2	2	2	0	X	1	1	1	1	X	7,675,588
2	2	2	2	2	2	0	X	1	1	1	1	X	7,675,614

block 10	XXX	XXXX	129	B/B	B/C	BUB	FVB	LGJ	LPJ	NZW	SMJ	C3H	DBA	NZB		AKR	MRL		A/H	A/J	B10	C57
	8		2	2	2	2	2	2	2	2	2	0	0	0	X	1	1	X	0	0	0	0		8,521,782
			2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	0	0	0	0		8,521,910

block 11	XXX	XXXX	A/H	AKR	B10	B/C	BUB	C3H	C57	DBA	FVB	LGJ	MRL	SMJ		129	LPJ	NZB	NZW		A/J	B/B
			2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	X	0	0		8,523,101

block 12	A/H	FVB	LGJ	LPJ	NZB	NZW	SMJ	B10	DBA	B/C	BUB	B/B	C57	129	C3H		MRL	AKR
Trpc6	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,523,768
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,523,770
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,589,082
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,589,840
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,589,855
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,590,151
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,590,253
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,590,254
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,590,333
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,590,334
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,590,399
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,590,400
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,590,407
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,590,408
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,590,462
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,590,463
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,590,485
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,590,486
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,590,537
	2	2	2	2	2	2	2	2	2	2	2	0	2	2	2	X	1	1	X	8,590,538
	2	2	2	2	2	2	2	2	2	2	2	2	0	2	2	X	1	1	X	8,590,566
	2	2	2	2	2	2	2	2	0	0	0	0	0	0	0	X	1	1	X	8,590,567
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,590,693
	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	8,614,709
	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	8,614,736
	2	2	2	2	2	2	2	2	2	2	2	0	2	2	2	X	1	1	X	8,615,213
	2	2	2	2	2	2	2	2	2	0	0	2	0	2	0	X	1	0	X	8,615,220
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	0	X	8,624,393
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	0	X	8,624,395
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,624,643
	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	1	X	8,624,645
	2	2	2	2	2	2	2	0	2	2	2	2	2	2	0	X	1	1	X	8,630,492
	2	2	2	2	2	2	2	0	0	0	0	0	0	0	2	X	1	0	X	8,635,805
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,635,866
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,636,103
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	8,637,269
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	0	X	8,637,454

block 13	XXX	XXXX	129	B10	B/C	LGJ	LPJ	NZB	SMJ	A/H	C3H	C57	DBA	FVB	NZW		AKR	MRL		B/B	BUB		A/J
			2	2	2	2	2	2	2	0	0	0	0	0	0	X	2	2	X	1	1	X	0		8,639,425
			2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	2	0	X	0		8,658,379

block 14	XXX	XXXX	129	A/H	AKR	B10	B/C	BUB	C3H	C57	FVB	LGJ	LPJ	MRL	NZB	NZW	SMJ		B/B		DBA		A/J
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	X	1	X	0		8,658,582
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	X	0		8,658,745

block 15	XXX	XXXX	B10	BUB	C57	FVB	LGJ	LPJ	NZB	NZW	SMJ	129	A/H	B/B	B/C	C3H	DBA		AKR	MRL		A/J
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	0		8,660,027
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1