Chromosome 10 Haplotype

Chromosome 10

Run ID: 3294 Total SNPs: 585 Total Blocks: 127 Coverage: .8 Minimum Strains: 9

block 1	XXX	XXXX	129	A/H	A/J	AKR	B/B	B/C	C57	LGJ		C3H	DBA	NZB		B10	BUB	FVB	LPJ	MRL	NZW	SMJ
	3		2	2	2	2	2	2	2	2	X	1	1	1	X	0	0	0	0	0	0	0		3,559,366

block 2	XXX	XXXX	B10	LGJ	A/H	B/B	NZB	129	A/J	AKR	DBA	NZW	C57		SMJ	LPJ	MRL	B/C		BUB	C3H	FVB
			2	2	2	2	2	0	0	0	2	2	0	X	1	0	1	0	X	0	0	0		3,559,378
			2	2	2	2	2	2	2	2	2	2	2	X	1	1	0	0	X	0	0	0		3,559,413
			2	2	2	2	2	0	0	0	0	0	0	X	1	1	1	1	X	0	0	0		3,559,529
			2	2	0	0	0	2	2	2	0	0	0	X	1	1	1	1	X	0	0	0		3,559,673

block 3	XXX	XXXX	B10	C3H	C57	DBA	MRL		129	A/J	AKR	B/C		A/H	B/B	BUB	FVB	LGJ	LPJ	NZB	NZW	SMJ
			2	2	2	2	2	X	1	1	1	1	X	0	0	0	0	0	0	0	0	0		3,560,877

block 4	XXX	XXXX	A/H	AKR	B/B	B/C	C57	FVB	LGJ	NZB	SMJ	129	A/J	B10	DBA	LPJ	MRL	NZW	C3H		BUB
ENS::19768	5		2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1		5,350,403
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1		5,350,405
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1		5,351,327
			2	2	2	2	2	2	2	2	2	0	0	0	0	0	0	0	0	X	1		5,351,433

block 5	XXX	XXXX	129	A/H	A/J	AKR	B/B	B/C	BUB	FVB	LGJ	LPJ	MRL	NZW	SMJ	C3H	DBA		B10	C57	NZB
			2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	1	0		5,383,179
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1		5,383,291
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1		5,383,292
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1		5,383,303
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1		5,383,378
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1		5,383,416
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1		5,383,586

block 6	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	C57	LGJ	LPJ	SMJ		C3H	DBA	FVB	MRL	NZB	NZW		BUB
			2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	X	0		5,494,805

block 7	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	C57	DBA	FVB	LGJ	LPJ	MRL	NZB	NZW	SMJ	C3H		BUB
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1		5,603,297
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1		5,603,421
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1		5,603,515

block 8	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	C3H	C57	DBA	FVB	LGJ	LPJ	MRL	NZW	SMJ		BUB	NZB
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1		5,636,341
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1		5,636,347
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1		5,636,510
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1		5,636,515
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1		5,636,533
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1		5,636,538
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1		5,637,444
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1		5,637,520

block 9	XXX	XXXX	A/H	B10	B/B	B/C	C57	DBA	FVB	LGJ	LPJ	NZW	SMJ		A/J	BUB		129	AKR	C3H	MRL	NZB
			2	2	2	2	2	2	0	0	2	0	0	X	1	1	X	0	0	0	0	0		5,637,600
			2	2	2	2	2	2	2	2	0	2	2	X	1	1	X	0	0	0	0	0		5,637,605

block 10	XXX	XXXX	AKR	B10	DBA	NZB	A/H	A/J	B/B	C3H	LGJ	SMJ	129	B/C	BUB	C57	LPJ		FVB		MRL	NZW
			2	2	2	2	0	2	0	2	2	0	0	0	0	2	0	X	1	X	0	0		5,638,803
			2	2	2	2	2	0	2	0	0	2	0	2	2	0	0	X	1	X	0	0		5,638,890
			2	2	2	2	2	2	2	2	2	2	2	0	0	0	2	X	1	X	0	0		5,638,935

block 11	XXX	XXXX	129	AKR	B10	B/B	BUB	DBA	NZB	SMJ		FVB	LGJ		A/H	A/J	B/C	C3H	C57	LPJ	MRL	NZW
			2	2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0	0	0	0		5,638,969

block 12	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	C57	DBA	LGJ	LPJ	MRL	SMJ	C3H	FVB	NZW		BUB	NZB
			2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	2	X	1	1		5,639,770
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1		5,641,078

block 13	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	BUB	C57	LGJ	LPJ	NZB	SMJ		DBA	MRL		C3H	FVB	NZW
			2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	0	0	0		5,641,134

block 14	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	C57	SMJ	LGJ	LPJ		C3H	DBA	MRL	NZB	NZW		BUB	FVB
	7		2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	0	X	0	0		7,333,896
			2	2	2	2	2	2	2	2	2	0	0	X	1	1	1	1	1	X	0	0		7,333,923
			2	2	2	2	2	2	2	2	2	0	0	X	1	1	1	1	1	X	0	0		7,333,998
			2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	0	0		7,335,536
			2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	0	0		7,335,725

block 15	XXX	XXXX	B10	C3H	C57	DBA	MRL	NZB	NZW		129	A/H	A/J	AKR	B/B	B/C		BUB	FVB	LGJ	LPJ	SMJ
	8		2	2	2	2	2	2	2	X	1	1	1	1	1	1	X	0	0	0	0	0		8,615,698

block 16	XXX	XXXX	A/H	A/J	AKR	B/B	B/C	C3H	MRL		B10	C57	DBA	NZB	NZW		129	BUB	FVB	LGJ	LPJ	SMJ
Utrn	12		2	2	2	2	2	2	2	X	1	1	1	1	1	X	0	0	0	0	0	0		12,539,045

block 17	XXX	XXXX	129	A/J	AKR	MRL	NZB	NZW	A/H	B/B	B/C	LPJ	LGJ	C3H		DBA	C57	SMJ	B10		BUB	FVB
Ctgf	24		2	2	2	2	2	2	2	2	2	2	0	0	X	1	0	1	1	X	0	0		24,358,058
			2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	0	X	0	0		24,358,260
			2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	X	0	0		24,358,519
			2	2	2	2	2	2	2	2	0	2	0	0	X	1	1	1	1	X	0	0		24,358,642
			2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	0	X	0	0		24,359,343
			2	2	2	2	2	2	2	2	2	0	0	2	X	1	1	0	1	X	0	0		24,360,033
			2	2	2	2	2	2	0	0	2	2	2	0	X	1	1	1	1	X	0	0		24,360,035

block 18	XXX	XXXX	A/H	A/J	AKR	B/B	B/C	C3H	MRL	NZB	NZW		B10	C57	DBA		129	BUB	FVB	LGJ	LPJ	SMJ
Lama2	26		2	2	2	2	2	2	2	2	2	X	1	1	1	X	0	0	0	0	0	0		26,792,746

block 19	XXX	XXXX	129	A/H	A/J	B10	B/B	B/C	C57	NZB	NZW		AKR	C3H	DBA	MRL		BUB	FVB	LGJ	LPJ	SMJ
	28		2	2	2	2	2	2	2	2	2	X	1	1	1	1	X	0	0	0	0	0		28,385,222

block 20	XXX	XXXX	129	A/H	DBA	LGJ	LPJ	MRL	SMJ	B/B	NZB	NZW		C57	A/J		AKR	B10	B/C	BUB	C3H	FVB
	35		2	2	2	2	2	2	2	0	0	0	X	1	1	X	0	0	0	0	0	0		35,567,421
			2	2	2	2	2	2	2	2	2	2	X	1	0	X	0	0	0	0	0	0		35,567,424

block 21	XXX	XXXX	129	A/H	AKR	B/B	B/C	DBA	LGJ	LPJ	MRL	NZB	NZW	SMJ	A/J	C57		B10		BUB	C3H	FVB
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0		35,567,475
			2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	X	0	0	0		35,567,502
			2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	X	0	0	0		35,567,573

block 22	XXX	XXXX	A/J	B/B	DBA	FVB	LGJ	MRL	NZB	NZW	A/H	AKR	BUB	B10	C57	SMJ	B/C		LPJ	129		C3H
	42		2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	2		42,468,303
			2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	0		42,468,449
			2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	2		42,468,548
			2	2	2	2	2	2	2	2	2	2	2	0	0	2	0	X	1	1	X	2		42,468,960
			2	2	2	2	2	2	2	2	2	2	0	0	0	2	0	X	2	2	X	1		42,468,980
			2	2	2	2	2	2	2	2	0	2	0	0	0	2	0	X	2	0	X	1		42,469,200
Nr2e1			2	2	2	2	2	2	2	2	2	0	2	2	2	2	0	X	0	0	X	1		42,469,731
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	X	1		42,469,969

block 23	XXX	XXXX	129	A/J	AKR	B10	B/B	BUB	C3H	C57	DBA	FVB	LGJ	LPJ	MRL	NZB	NZW	SMJ		B/C		A/H
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0		42,469,980

block 24	XXX	XXXX	129	A/J	C57	LGJ	LPJ	NZB	SMJ	B/B	B/C	DBA	FVB	MRL	NZW		BUB	C3H		A/H	AKR	B10
			2	2	2	2	2	2	2	2	0	2	2	2	2	X	0	1	X	0	0	0		42,470,731
			2	2	2	2	2	2	2	0	2	0	0	0	0	X	1	0	X	0	0	0		42,470,894

block 25	XXX	XXXX	A/J	BUB	C3H	FVB	LGJ	MRL	NZB	NZW	SMJ	B/B	DBA		AKR	B/C	C57	B10		129		A/H	LPJ
			2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	0	X	0	X	0	0		42,471,038
			2	2	2	2	2	2	2	2	2	0	0	X	2	2	2	2	X	1	X	0	0		42,471,189

block 26	XXX	XXXX	A/J	AKR	B10	B/C	BUB	C57	FVB	LGJ	NZB	NZW		129	C3H		A/H	B/B	DBA	LPJ	MRL	SMJ
			2	2	2	2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0	0		42,471,192

block 27	XXX	XXXX	A/J	B10	FVB	MRL	AKR	B/B	BUB	C3H	C57	NZB	NZW	SMJ	A/H	DBA		129	LPJ		LGJ	B/C
			2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	0	X	2	2		42,471,193
			2	2	2	2	0	0	0	2	0	0	0	0	2	0	X	0	1	X	1	1		42,474,501
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	2	2		42,474,779
			2	2	2	2	2	2	2	2	2	2	2	2	0	2	X	2	2	X	1	0		42,475,093
			2	2	2	2	2	2	2	0	2	2	2	2	2	2	X	2	2	X	1	0		42,475,098
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	2	2		42,481,426

block 28	XXX	XXXX	129	A/J	B/B	B/C	BUB	DBA	FVB	LGJ	MRL	NZB	NZW	SMJ		C57		A/H	AKR	B10	C3H	LPJ
			2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0	0		42,485,886

block 29	XXX	XXXX	AKR	B/C	LPJ	MRL	SMJ	129	A/J	B/B	C3H	DBA	NZB	C57	NZW		B10	A/H	LGJ		BUB	FVB
Cd24a	43		2	2	2	2	2	0	2	2	0	2	2	0	0	X	1	0	0	X	0	0		43,490,844
			2	2	2	2	2	2	2	2	2	0	2	0	0	X	1	0	1	X	0	0		43,490,908
			2	2	2	2	2	2	2	2	2	2	0	2	2	X	1	0	0	X	0	0		43,490,978
			2	2	2	2	2	2	0	0	2	2	2	0	0	X	1	1	0	X	0	0		43,490,981

block 30	XXX	XXXX	129	A/H	A/J	AKR	B10	B/C	C3H	C57	NZB	B/B	DBA		SMJ		BUB	FVB	LGJ	LPJ	MRL	NZW
			2	2	2	2	2	2	2	2	2	0	2	X	1	X	0	0	0	0	0	0		43,491,013
			2	2	2	2	2	2	2	2	2	2	0	X	1	X	0	0	0	0	0	0		43,491,015

block 31	XXX	XXXX	A/H	A/J	AKR	B10	B/B	B/C	C3H	C57	DBA	MRL	NZB	NZW	SMJ		129		BUB	FVB	LGJ	LPJ
			2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0		43,493,017

block 32	XXX	XXXX	129	DBA	LPJ	MRL	SMJ	A/J	AKR	B/B	B/C	C3H	C57	A/H	NZW		B10		NZB		BUB	FVB	LGJ
			2	2	2	2	2	0	0	2	0	0	0	2	2	X	1	X	2	X	0	0	0		43,494,195