Chromosome 11 Haplotype

Chromosome 11

Run ID: 3295 Total SNPs: 3641 Total Blocks: 534 Coverage: .8 Minimum Strains: 9

block 1	XXX	XXXX	A/H	A/J	AKR	B/B	B/C	LGJ	LPJ	MRL	NZB	NZW		C3H	C57	SMJ		B10		129	BUB	DBA	FVB
Aebp1	5		2	2	2	2	2	2	2	2	2	2	X	2	2	2	X	1	X	0	0	0	0		5,759,077
			2	2	2	2	2	2	2	2	2	2	X	1	1	1	X	2	X	0	0	0	0		5,759,359

A/H	AKR	C3H	NZB	NZW	SMJ	A/J	C57	MRL		B/B	B/C	LGJ	LPJ		B10
2	2	2	2	2	2	2	2	2	X	1	1	1	1	X	1	X	5,759,517
2	2	2	2	2	2	2	2	2	X	1	1	1	1	X	1	X	5,759,941
2	2	2	2	2	2	2	2	2	X	2	2	2	2	X	1	X	5,760,505
2	2	2	2	2	2	0	2	0	X	2	2	2	2	X	1	X	5,760,902
2	2	2	2	2	2	2	0	2	X	1	1	1	1	X	2	X	5,762,505
2	2	2	2	2	2	2	2	2	X	1	1	1	1	X	1	X	5,762,600
2	2	2	2	2	2	2	2	2	X	1	1	1	1	X	1	X	5,763,312
2	2	2	2	2	2	2	2	2	X	1	1	1	1	X	2	X	5,763,360

block 3	XXX	XXXX	A/H	A/J	AKR	BUB	DBA	FVB	LGJ	NZB	129	B10	C3H	C57	MRL	NZW		LPJ	B/C	SMJ		B/B
			2	2	2	2	2	2	2	2	0	0	0	0	0	0	X	2	0	0	X	1		5,764,060
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	X	0		5,764,462

129	A/J	AKR	B10	B/C	BUB	C3H	FVB	LGJ	LPJ	MRL	NZB	NZW	SMJ	A/H	B/B	C57		DBA
2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	0	X	1	5,764,778
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	5,765,244
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	5,765,350

block 5	XXX	XXXX	129	A/H	A/J	AKR	B10	B/C	BUB	FVB	LGJ	LPJ	NZB	NZW	SMJ	B/B		C3H	C57		DBA		MRL
			2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	2	X	0		5,765,501
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	X	1	X	0		5,765,708

block 6	XXX	XXXX	129	A/H	A/J	AKR	DBA	LGJ	NZB	NZW	BUB	C3H	FVB	MRL		LPJ	SMJ	B/B	B/C		B10	C57
			2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	X	2	2		5,765,891
			2	2	2	2	2	2	2	2	0	0	0	2	X	2	2	0	0	X	1	0		5,766,173

block 7	129	A/H	A/J	AKR	B10	FVB	LGJ	LPJ	MRL	NZB	NZW	BUB	C3H	C57		B/C	SMJ	B/B		DBA
	2	2	2	2	2	2	2	2	2	2	2	0	2	2	X	2	2	2	X	1	5,766,531
Pold2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	0	X	2	5,767,126
	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	2	2	0	X	1	5,767,142

block 8	XXX	XXXX	129	B10	DBA	NZB	C3H	C57	LGJ	NZW		B/B	B/C	BUB	FVB	SMJ		A/H	A/J	AKR	MRL		LPJ
			2	2	2	2	0	0	2	0	X	1	1	1	1	1	X	2	2	2	2	X	0		5,767,298
	6		2	2	2	2	2	2	0	2	X	2	2	0	0	0	X	1	1	1	1	X	0		6,577,593

block 9	XXX	XXXX	129	A/H	A/J	C57	DBA	NZB	NZW		AKR	B10	B/B	B/C	C3H	MRL		BUB	FVB	LGJ	LPJ	SMJ
Tens1	8		2	2	2	2	2	2	2	X	1	1	1	1	1	1	X	0	0	0	0	0		8,396,988

block 10	XXX	XXXX	129	A/H	A/J	AKR	B/B	B/C	C3H	DBA	MRL	NZB	NZW		B10	C57		BUB	FVB	LGJ	LPJ	SMJ
A830006F12Rik	11		2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0		11,065,935
			2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0		11,065,962

block 11	XXX	XXXX	A/H	A/J	AKR	B/B	B/C	NZB	NZW		129	B10	C57	MRL		BUB	C3H	DBA	FVB	LGJ	LPJ	SMJ
	19		2	2	2	2	2	2	2	X	1	1	1	1	X	0	0	0	0	0	0	0		19,615,899

block 12	129	A/H	A/J	AKR	B10	B/B	C3H	C57	MRL	B/C		NZB	NZW
ENS::48250	2	2	2	2	2	2	2	2	2	2	X	1	1	X	19,615,908
	2	2	2	2	2	2	2	2	2	2	X	1	1	X	19,616,048
	2	2	2	2	2	2	2	2	2	2	X	1	1	X	19,616,058
	2	2	2	2	2	2	2	2	2	0	X	1	1	X	19,616,174
	2	2	2	2	2	2	2	2	2	0	X	1	1	X	19,616,234
	2	2	2	2	2	2	2	2	2	0	X	1	1	X	19,616,373
	2	2	2	2	2	2	2	2	2	0	X	1	1	X	19,616,435

block 13	XXX	XXXX	A/H	A/J	AKR	B/B	B/C	NZB	NZW		129	B10	C3H	C57	DBA	MRL		BUB	FVB	LGJ	LPJ	SMJ
Actr2			2	2	2	2	2	2	2	X	1	1	1	1	1	1	X	0	0	0	0	0		19,957,999

block 14	XXX	129	A/J	DBA	B/B	B/C	C57	C3H	AKR	A/H	B10	MRL		NZW	NZB
	20	2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	20,197,751
		2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	20,197,764
Slc1a4		2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	20,197,950
		2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	20,197,981
		2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	20,197,984
		2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	20,198,411
		2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	20,198,583
		2	2	2	2	2	2	2	2	0	0	0	X	1	1	X	20,198,943
		2	2	2	2	0	2	2	2	0	0	0	X	1	1	X	20,199,913
		2	2	2	2	2	2	2	2	0	2	0	X	1	1	X	20,200,385
		2	2	2	2	2	2	2	2	0	2	0	X	1	1	X	20,200,386
		2	2	2	2	2	2	2	2	0	2	0	X	1	1	X	20,200,411
		2	2	2	2	2	2	2	2	0	2	0	X	1	1	X	20,200,412
		2	2	2	2	2	2	2	2	0	2	0	X	1	1	X	20,200,423
		2	2	2	2	2	2	2	2	0	2	0	X	1	1	X	20,200,460
		2	2	2	2	2	2	2	2	0	2	0	X	1	1	X	20,200,513
		2	2	2	2	2	2	2	2	0	0	0	X	1	1	X	20,200,549
		2	2	2	2	2	2	0	2	0	0	0	X	1	1	X	20,200,553
		2	2	2	2	2	2	2	2	0	0	0	X	1	1	X	20,200,561
		2	2	2	2	2	2	2	2	0	0	0	X	1	0	X	20,200,574
		2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	20,200,717
		2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	20,200,722
		2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	20,200,785
		2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	20,200,811
		2	2	2	2	2	2	2	2	2	0	0	X	1	0	X	20,200,840
		2	2	2	2	2	2	2	2	2	0	0	X	1	0	X	20,200,879
		2	2	2	2	2	2	2	2	0	0	0	X	1	0	X	20,200,947
		2	2	2	2	2	2	2	2	0	2	0	X	1	0	X	20,200,962
		2	2	2	2	2	2	2	2	0	0	0	X	1	1	X	20,201,055
		2	2	2	2	2	2	2	2	0	0	0	X	1	1	X	20,201,077
		2	2	2	2	2	2	2	2	0	2	0	X	1	1	X	20,201,151
		2	2	2	2	2	2	2	0	2	0	0	X	1	1	X	20,201,282
		2	2	2	2	2	2	2	0	2	0	0	X	1	1	X	20,201,283
		2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	20,201,308
		2	2	2	2	2	2	2	0	2	0	0	X	1	1	X	20,201,345
		2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	20,201,457
		2	2	2	2	2	2	2	0	2	0	0	X	1	1	X	20,201,474
		2	2	2	0	2	2	2	2	0	2	0	X	1	1	X	20,202,123
		2	2	2	2	2	2	2	2	0	2	2	X	1	1	X	20,203,120
		2	2	2	2	2	2	0	2	0	0	0	X	1	1	X	20,203,150
		2	2	2	2	2	0	2	2	0	0	0	X	1	1	X	20,203,163
		2	2	2	2	2	2	2	2	0	0	0	X	1	1	X	20,203,225

block 15	XXX	XXXX	129	A/J	B/B	B/C	C3H	C57	DBA	NZB	NZW		AKR		A/H	B10	BUB	FVB	LGJ	LPJ	MRL	SMJ
			2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0	0	0	0	0		20,203,302

A/J	AKR	B/B	B/C	C57	A/H	B10	MRL		C3H	DBA	129		NZW	NZB
2	2	2	2	2	0	0	0	X	2	2	2	X	1	1	X	20,203,345
2	2	2	2	2	0	0	0	X	2	2	2	X	1	1	X	20,203,356
2	2	2	2	2	0	0	0	X	2	2	2	X	1	1	X	20,203,358
2	2	2	2	2	0	0	0	X	2	2	2	X	1	0	X	20,203,442
2	2	2	2	2	0	2	2	X	2	2	2	X	1	1	X	20,203,550
1	1	1	1	0	1	0	0	X	2	2	2	X	2	2	X	20,204,191
2	2	2	2	0	2	0	0	X	1	1	1	X	2	2	X	20,204,236
2	2	2	2	0	2	0	0	X	2	2	0	X	1	1	X	20,204,486
2	2	2	2	0	2	0	0	X	1	1	0	X	2	2	X	20,204,636
2	2	2	2	0	0	2	0	X	2	2	0	X	1	1	X	20,205,369

block 17	XXX	XXXX	A/J	AKR	B10	B/B	B/C	C3H	C57	DBA	NZB	NZW		129		A/H	BUB	FVB	LGJ	LPJ	MRL	SMJ
			2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0	0	0	0		20,205,619

block 18	XXX	XXXX	A/J	AKR	B/C	B/B	C57	A/H		DBA	C3H	129	MRL	B10		NZW	NZB		BUB	FVB	LGJ	LPJ	SMJ
			2	2	2	2	2	2	X	2	2	2	2	0	X	1	1	X	0	0