Chromosome 12 Haplotype

Chromosome 12

Run ID: 3296 Total SNPs: 1056 Total Blocks: 104 Coverage: .8 Minimum Strains: 9

block 1	XXX	XXXX	129	A/J	AKR	C3H	C57	DBA	LPJ	NZW	A/H	B10	B/B	B/C	NZB	SMJ		LGJ	MRL		BUB	FVB
Sdc1	8		2	2	2	2	2	2	2	2	0	0	0	2	0	0	X	1	1	X	0	0		8,809,744
			2	2	2	2	2	2	2	2	2	2	2	0	2	2	X	1	0	X	0	0		8,811,035

block 2	XXX	XXXX	A/H	A/J	AKR	B10	B/B	B/C	BUB	C3H	C57	DBA	FVB	LPJ	SMJ		129	LGJ	MRL	NZB	NZW
	11		2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1		11,210,270

block 3	129	A/H	A/J	B/B	B/C	DBA	LGJ	MRL	NZB	NZW	SMJ		AKR	B10	BUB	C3H	C57	FVB		LPJ
	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	X	2	11,210,692
Kcns3	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	11,211,100
	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	X	2	11,211,104
	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	0	X	2	11,211,409

block 4	XXX	XXXX	A/H	A/J	AKR	B10	B/B	B/C	BUB	C3H	C57	DBA	FVB	LGJ	MRL	SMJ		129	NZB	NZW		LPJ
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	X	2		11,211,831
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	2	X	1		11,211,833

block 5	XXX	XXXX	129	DBA	LGJ	MRL	NZB	NZW	SMJ		AKR	B10	BUB	C3H	C57	FVB	LPJ		A/H	B/B	B/C		A/J
			2	2	2	2	2	2	2	X	2	2	2	2	2	2	2	X	1	1	1	X	0		11,212,027
			2	2	2	2	2	2	2	X	1	1	1	1	1	1	1	X	2	2	2	X	0		11,212,339

block 6	XXX	XXXX	A/J	AKR	B10	B/B	B/C	BUB	C3H	C57	DBA	FVB	LGJ	LPJ	MRL	SMJ		NZB	NZW		129	A/H
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	0	0		11,212,924

129	A/H	A/J	B/B	B/C	DBA	LGJ	MRL	NZB	NZW	SMJ		AKR	B10	BUB	C3H	C57	LPJ	FVB
2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	1	11,213,175
2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	1	11,213,283
2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	1	11,213,325
2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	0	11,213,343
2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	1	11,213,424
2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	0	11,213,451
2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	1	11,213,566

block 8	XXX	XXXX	129	A/H	A/J	B/B	B/C	FVB	LGJ	MRL	NZB	NZW		AKR	B10	BUB	C3H	C57	DBA	LPJ	SMJ
			2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	1	1		11,213,654

129	A/H	A/J	B/B	B/C	DBA	LPJ	NZB	SMJ		AKR	B10	BUB	C3H	C57	LGJ	MRL	NZW
2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	1	1	X	11,240,545
2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	1	1	X	11,240,547
2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	1	1	X	11,240,556
2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	1	1	X	11,240,558

129	A/H	A/J	AKR	B10	B/B	B/C	BUB	C3H	C57	DBA	FVB	LGJ	MRL	NZB	SMJ		LPJ		NZW
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	X	1	11,240,760
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	X	1	11,240,762
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	11,240,857
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2	11,240,859

block 11	XXX	XXXX	A/H	A/J	AKR	B10	B/B	B/C	BUB	C3H	C57		129	DBA	LGJ	LPJ	MRL	NZB	SMJ	FVB		NZW
			2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	1	0	X	1		11,271,766
			2	2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	2	2	X	1		11,271,910

block 12	XXX	XXXX	129	AKR	B10	BUB	C3H	C57	DBA	FVB	LGJ	LPJ	MRL	NZB	NZW	SMJ		A/H	A/J	B/B	B/C
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1		11,271,997

A/H	AKR	B10	B/C	BUB	C3H	NZW	B/B	C57		129	DBA	LGJ	LPJ	MRL	NZB	SMJ		FVB
2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	1	X	2	X	11,272,788
2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	1	1	X	2	X	11,272,790
2	2	2	2	2	2	2	0	0	X	2	2	2	2	2	2	2	X	1	X	11,273,061
2	2	2	2	2	2	2	0	0	X	2	2	2	2	2	2	2	X	1	X	11,273,091

block 14	XXX	XXXX	129	A/H	B/C	DBA	LGJ	LPJ	MRL	NZB	NZW	B/B	SMJ		AKR	B10	BUB	C3H		FVB		A/J	C57
			2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	X	2	X	0	0		11,273,102
			2	2	2	2	2	2	2	2	2	0	0	X	2	2	2	2	X	1	X	0	0		11,273,155

block 15	XXX	XXXX	129	A/J	AKR	B/B	B/C	C3H	DBA	MRL		B10	C57	NZB	NZW		A/H	BUB	FVB	LGJ	LPJ	SMJ
	19		2	2	2	2	2	2	2	2	X	1	1	1	1	X	0	0	0	0	0	0		19,765,126

block 16	XXX	XXXX	129	A/H	A/J	AKR	B/B	B/C	C3H	DBA	MRL	NZB	NZW		B10	C57		BUB	FVB	LGJ	LPJ	SMJ
	25		2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0		25,037,509

block 17	XXX	AKR	DBA	NZB	LGJ	MRL	129	LPJ	NZW		A/J	B/C	C3H	SMJ	B/B	A/H		B10	C57
	30	2	2	2	2	2	2	2	2	X	2	2	2	2	2	0	X	1	1	X	30,529,936
Ahr		2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	1	X	30,531,050
		2	2	2	2	2	2	2	2	X	2	2	2	2	0	0	X	1	1	X	30,532,163
		2	2	2	2	2	0	2	0	X	2	2	2	2	2	2	X	1	1	X	30,532,257
		2	2	2	2	2	0	2	0	X	2	2	2	2	2	2	X	1	1	X	30,532,371
		2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	1	X	30,532,598
		2	2	2	2	2	2	2	2	X	2	2	2	2	2	0	X	1	1	X	30,532,708
		2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	1	X	30,532,714
		2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	1	X	30,532,767
		2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	1	X	30,532,791
		2	2	2	2	2	2	0	0	X	2	2	2	2	2	2	X	1	1	X	30,532,833
		2	2	2	0	2	0	0	2	X	2	2	2	0	0	2	X	1	1	X	30,534,796
		2	2	2	2	2	2	2	0	X	1	1	1	1	1	0	X	2	2	X	30,535,872
		2	2	2	2	2	2	2	0	X	2	2	2	2	2	0	X	1	1	X	30,535,960
		2	2	2	2	0	2	0	0	X	2	2	2	0	0	0	X	1	1	X	30,536,309
		2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	1	X	30,536,369
		2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	1	X	30,536,377
		2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	1	X	30,536,462
		2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	1	X	30,536,550
		2	2	2	2	2	2	2	0	X	2	2	2	2	0	0	X	1	1	X	30,536,730
		2	2	2	2	2	2	2	0	X	2	2	2	2	0	0	X	1	1	X	30,536,753
		2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	1	X	30,537,406
		2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	1	X	30,537,517
		2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	1	X	30,538,211
		1	1	1	1	1	1	1	1	X	2	2	2	2	2	2	X	2	2	X	30,538,286
		2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	X	2	2	X	30,538,368
		2	2	2	2	2	2	2	2	X	2	2	2	2	2	0	X	1	1	X	30,538,463

block 18	XXX	XXXX	129	A/J	B/B	B/C	C3H	C57	LGJ	LPJ	MRL	NZW		DBA		A/H	AKR	B10	BUB	FVB	NZB	SMJ
			2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0	0	0	0		30,539,271

129	DBA	LGJ	MRL	NZB	AKR	LPJ	NZW		A/J	B/C	C3H	SMJ	A/H	B/B		C57	B10		FVB
2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	0	X	0	30,539,295
2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	1	X	0	30,539,407
2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	1	X	0	30,539,467
2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	1	X	0	30,539,479
2	2	2	2	2	2	2	0	X	2	2	2	2	2	2	X	1	1	X	0	30,539,568
2	2	2	2	2	2	2	0	X	2	2	2	2	0	0	X	1	1	X	0	30,540,132
2	2	2	2	2	2	2	0	X	2	2	0	2	2	0	X	1	1	X	0	30,540,290
2	2	2	2	2	2	2	0	X	2	2	2	2	0	0	X	1	1	X	0	30,540,387
2	2	2	2	2	2	2	0	X	2	2	2	2	0	0	X	1	1	X	0	30,541,954
1	1	1	1	1	1	1	0	X	2	2	2	2	0	2	X	2	2	X	0	30,542,149
2	2	2	2	2	2	0	0	X	2	2	2	0	0	0	X	1	1	X	0	30,542,203
2	2	2	2	2	2	0	0	X	1	1	1	0	0	0	X	1	1	X	0	30,542,219
2	2	2	2	2	0	2	2	X	2	2	2	2	2	2	X	1	1	X	0	30,542,979
2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	1	X	0	30,543,197
2	2	2	0	0	2	0	0	X	2	2	2	0	0	2	X	1	1	X	0	30,543,251
2	2	2	2	2	2	2	2	X	2	2	2	2	2	0	X	1	1	X	0	30,544,782
2	2	2	2	2	2	2	2	X	1	1	1	1	1	0	X	2	2	X	0	30,544,852
2	2	2	2	2	2	2	2	X	2	2	2	2	0	0	X	1	1	X	0	30,546,976
2	2	2	2	2	2	2	2	X	2	2	2	2	0	0	X	1	1	X	0	30,547,160
2	2	2	2	2	0	2	0	X	1	1	1	1	0	0	X	2	2	X	0	30,558,487
2	2	2	2	2	0	2	2	X	2	2	2	2	2	2	X	1	1	X	0	30,566,773
2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	1	X	0	30,566,787
2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	1	X	0	30,566,901
2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	X	2	2	X