Chromosome 16 Haplotype

Chromosome 16

Run ID: 3300 Total SNPs: 1018 Total Blocks: 138 Coverage: .8 Minimum Strains: 9

block 1	XXX	B10	B/B	B/C	BUB	C3H	C57	DBA	FVB	LGJ	MRL	NZB	NZW	SMJ	A/H	A/J	AKR		129	LPJ
Grin2a	9	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	9,331,963
		2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	9,332,071
		2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	9,345,497
		2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	0	X	1	1	9,677,324

block 2	XXX	XXXX	B10	B/B	B/C	BUB	C3H	C57	DBA	FVB	LGJ	MRL	NZB	NZW	SMJ		129	A/H	A/J	AKR	LPJ
			2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1		9,678,066

block 3	XXX	AKR	B10	B/B	C57	NZB	NZW	B/C	MRL	A/J	129	A/H		C3H	DBA
4932416N17Rik	10	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	10,432,486
		2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	10,478,055
		2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	10,478,117
		2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	10,478,161
		2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	10,478,223
		2	2	2	2	2	2	2	2	0	0	0	X	1	1	X	10,478,392
		2	2	2	2	2	2	2	2	0	0	0	X	1	1	X	10,478,453
		2	2	2	2	2	2	2	2	0	0	0	X	1	1	X	10,478,455
		2	2	2	2	2	2	2	0	2	2	2	X	1	1	X	10,478,814
		2	2	2	2	2	2	2	0	2	2	2	X	1	1	X	10,478,815
		2	2	2	2	2	0	2	2	2	0	0	X	1	1	X	10,479,149
		2	2	2	2	2	2	2	0	0	2	0	X	1	0	X	10,479,440
		2	2	2	2	2	2	2	2	0	2	0	X	1	1	X	10,479,490
		2	2	2	2	2	2	0	2	0	2	0	X	1	1	X	10,479,576
		2	2	2	2	2	2	0	2	0	2	0	X	1	1	X	10,479,598

block 4	XXX	XXXX	129	AKR	B/B	B/C	C3H	C57	MRL	NZB	NZW	B10		DBA	A/J		A/H	BUB	FVB	LGJ	LPJ	SMJ
			2	2	2	2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0	0		10,481,627
			2	2	2	2	2	2	2	2	2	0	X	1	0	X	0	0	0	0	0	0		10,481,639

block 5	XXX	XXXX	129	A/J	AKR	B10	B/B	B/C	C3H	C57	MRL	NZB	NZW		DBA		A/H	BUB	FVB	LGJ	LPJ	SMJ
			2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0	0	0		10,481,640

block 6	B10	B/B	B/C	C57	MRL	NZW	129	AKR	NZB	A/J	A/H		DBA	C3H
	2	2	2	2	2	2	2	2	2	2	0	X	1	0	X	10,481,668
	2	2	2	2	2	2	2	2	2	0	0	X	1	0	X	10,481,688
	2	2	2	2	2	2	2	2	2	2	0	X	1	0	X	10,481,691
	2	2	2	2	2	2	2	2	2	2	0	X	1	0	X	10,481,692
	2	2	2	2	2	2	2	2	2	2	0	X	1	0	X	10,481,693
	2	2	2	2	2	2	2	2	0	2	0	X	1	1	X	10,484,492
Prm1	2	2	2	2	2	2	2	2	2	0	0	X	1	0	X	10,488,396
	2	2	2	2	2	2	2	2	2	0	0	X	1	0	X	10,488,397
	2	2	2	2	2	2	0	0	2	2	2	X	1	1	X	10,488,627
	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	10,488,714
	2	2	2	2	2	2	2	2	2	0	2	X	1	1	X	10,488,737
	2	2	2	2	2	2	2	2	2	0	2	X	1	1	X	10,488,748
	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	10,488,876

block 7	XXX	XXXX	AKR	B10	B/C	C3H	C57	MRL	NZB	NZW		129	B/B		A/H	A/J	BUB	DBA	FVB	LGJ	LPJ	SMJ
	13		2	2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0	0	0	0		13,561,121

block 8	129	B10	B/B	B/C	C57	NZB	NZW	AKR	MRL	A/H	A/J		C3H	DBA
	2	2	2	2	2	2	2	2	2	0	0	X	1	0	X	13,561,132
	2	2	2	2	2	2	2	2	2	0	0	X	1	0	X	13,561,159
	2	2	2	2	2	2	2	0	0	2	2	X	1	1	X	13,561,601
Ntan1	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	13,564,925

block 9	XXX	XXXX	129	A/J	AKR	B10	B/B	B/C	C57	MRL	NZB	NZW		A/H	C3H	DBA		BUB	FVB	LGJ	LPJ	SMJ
			2	2	2	2	2	2	2	2	2	2	X	1	1	1	X	0	0	0	0	0		13,564,930

block 10	XXX	C57	129	B10	NZB	AKR	LPJ	A/H	A/J	LGJ	SMJ	MRL	NZW		B/B	B/C		C3H	DBA
		2	2	2	2	2	0	0	2	0	0	2	2	X	2	2	X	1	1	X	13,564,956
		2	2	2	2	2	0	2	2	0	0	0	2	X	2	2	X	1	1	X	13,565,721
		2	2	2	2	0	0	0	2	0	0	2	2	X	2	2	X	1	0	X	13,571,717
		2	2	2	2	2	0	0	2	0	0	2	2	X	2	2	X	1	1	X	13,572,372
		2	2	2	0	0	0	0	2	0	0	0	2	X	2	2	X	1	1	X	13,574,394
		2	2	2	2	2	0	2	0	0	0	2	2	X	2	2	X	1	1	X	13,574,395
		2	2	2	2	2	0	2	0	0	0	0	0	X	2	2	X	1	1	X	13,575,286
Abcc1	14	2	2	2	2	2	2	2	2	2	0	2	2	X	1	0	X	2	2	X	14,132,328
		2	2	2	2	2	2	2	2	2	0	2	2	X	1	0	X	2	2	X	14,132,462
		2	2	2	2	2	2	2	2	2	0	2	2	X	1	0	X	2	2	X	14,132,520
		2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	2	2	X	14,132,719
		2	2	2	2	2	2	2	2	2	2	2	0	X	2	2	X	1	1	X	14,132,804
		2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	0	2	X	14,133,077
		2	2	2	2	2	2	2	2	2	2	0	2	X	1	1	X	1	1	X	14,133,392
		2	2	2	2	0	2	2	2	0	2	0	2	X	1	1	X	1	1	X	14,133,394
		2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	2	2	X	14,133,779
		2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	1	1	X	14,133,823
		2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	2	2	X	14,134,355
		2	2	2	2	2	2	2	2	2	0	2	2	X	1	0	X	2	2	X	14,135,302
		2	2	2	2	2	2	2	2	2	0	2	2	X	2	0	X	1	1	X	14,135,428
		2	2	2	2	0	2	2	2	2	0	2	2	X	1	0	X	1	1	X	14,135,469
		2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	X	1	1	X	14,135,928
		2	2	2	2	2	2	2	0	2	2	0	2	X	2	2	X	1	1	X	14,136,407
		2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	2	2	X	14,136,532
		2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	X	1	1	X	14,136,698
		2	2	2	2	2	2	2	2	2	2	0	0	X	2	2	X	1	1	X	14,136,911
		2	0	2	2	2	2	2	2	2	2	2	2	X	1	1	X	1	1	X	14,137,613
		2	2	2	2	2	2	2	0	2	2	0	0	X	2	2	X	1	0	X	14,138,424
		2	2	2	2	2	2	0	2	2	2	0	0	X	1	1	X	0	2	X	14,138,629
		2	2	2	2	0	2	2	2	2	2	2	2	X	1	1	X	1	1	X	14,138,985
		2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	0	0	X	14,139,217
		2	2	2	2	2	2	2	0	2	2	0	2	X	2	2	X	1	1	X	14,139,474
		2	2	2	2	2	2	2	0	2	2	0	2	X	1	1	X	2	2	X	14,139,597
		2	2	0	2	2	2	2	0	0	2	0	2	X	1	1	X	1	1	X	14,147,153
		2	2	2	2	2	2	2	2	2	2	0	2	X	2	2	X	1	1	X	14,147,155
		2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	1	1	X	14,149,173
		2	2	2	2	2	2	2	2	2	0	2	2	X	1	1	X	1	0	X	14,150,574
		2	2	2	2	2	2	0	2	2	2	2	0	X	1	1	X	0	1	X	14,150,976
		2	2	2	2	2	2	0	2	2	2	2	0	X	1	1	X	1	1	X	14,150,978
		2	2	2	2	2	2	0	2	2	2	2	0	X	1	1	X	1	1	X	14,150,979
		2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	0	1	X	14,151,006
		2	2	2	2	2	2	0	2	2	2	2	0	X	2	0	X	1	0	X	14,152,267
		2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	1	1	X	14,152,417
		2	2	2	2	2	2	2	0	0	2	2	0	X	2	2	X	1	1	X	14,154,819
		2	2	2	2	2	2	2	0	2	2	2	0	X	1	1	X	2	2	X	14,155,001

block 11	XXX	XXXX	A/J	B10	B/B	C57	LGJ	LPJ	NZB		C3H	SMJ		129	A/H	AKR	B/C	BUB	DBA	FVB	MRL	NZW
			2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0	0	0	0	0		14,156,357

block 12	XXX	XXXX	129	A/H	A/J	AKR	B10	C57	LGJ	LPJ	NZB	SMJ		B/B	B/C		C3H		BUB	DBA	FVB	MRL	NZW
			2	2	2	2	2	2	2	2	2	2	X	1	1	X	1	X	0	0	0	0	0		14,157,131
			2	2	2	2	2	2	2	2	2	2	X	2	2	X	1	X	0	0	0	0	0		14,157,192

129	AKR	B10	C57	LPJ	A/H	LGJ	NZB	SMJ	A/J	NZW		B/B	B/C	C3H	DBA		BUB	FVB	MRL
2	2	2	2	2	2	2	0	2	0	0	X	1	1	1	0	X	0	0	0	14,158,400
2	2	2	2	2	0	0	2	0	0	0	X	1	1	1	1	X	0	0	0	14,159,905
2	2	2	2	2	2	2	2	2	2	2	X	1