Chromosome 18 Haplotype

Chromosome 18

Run ID: 3302 Total SNPs: 842 Total Blocks: 112 Coverage: .8 Minimum Strains: 9

block 1	XXX	XXXX	A/J	AKR	B/B	B/C	C3H	DBA	LGJ	MRL	A/H	B10	C57		129	NZW		BUB	FVB	LPJ	NZB	SMJ
Npc1	12		2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	0	0	0	0	0		12,574,890
			2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	0	0	0	0	0		12,574,971
			2	2	2	2	2	2	2	2	0	0	2	X	1	0	X	0	0	0	0	0		12,575,857
			2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0		12,575,921
			2	2	2	2	2	2	2	2	0	2	2	X	1	1	X	0	0	0	0	0		12,575,994
			2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0		12,576,024
			2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0		12,576,044
			2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0		12,576,045

block 2	XXX	XXXX	A/J	AKR	B/C	C3H	C57	LGJ	MRL	DBA	A/H	B10	NZW	B/B	NZB		129		BUB	FVB	LPJ	SMJ
Lama3			2	2	2	2	2	2	2	2	0	2	0	2	0	X	1	X	0	0	0	0		12,820,295
			2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	X	0	0	0	0		12,820,320
			2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0		12,820,519
			2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	X	0	0	0	0		12,820,767
			2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	X	0	0	0	0		12,820,770
			2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	X	0	0	0	0		12,820,824
			2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	X	0	0	0	0		12,820,856
			2	2	2	2	2	2	2	0	2	2	2	2	0	X	1	X	0	0	0	0		12,820,942
			2	2	2	2	2	2	2	2	0	0	0	0	0	X	1	X	0	0	0	0		12,821,192
			2	2	2	2	2	2	2	2	2	0	2	0	0	X	1	X	0	0	0	0		12,821,233
			2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	X	0	0	0	0		12,821,296
			2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	X	0	0	0	0		12,821,369
			2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	X	0	0	0	0		12,821,421

block 3	XXX	XXXX	B10	B/B	C3H	C57	DBA	LGJ	MRL	NZB	NZW		129	A/J	AKR	LPJ		A/H	B/C	BUB	FVB	SMJ
Aqp4	15		2	2	2	2	2	2	2	2	2	X	1	1	1	1	X	0	0	0	0	0		15,764,266

block 4	XXX	XXXX	129	A/J	AKR	B10	B/C	C3H	C57		DBA	MRL		A/H	B/B	BUB	FVB	LGJ	LPJ	NZB	NZW	SMJ
	21		2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0	0	0	0	0		21,067,601

block 5	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	C3H	C57	DBA	LPJ	MRL	NZB	NZW	LGJ		SMJ		BUB	FVB
Ttr			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0		21,069,107
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	X	0	0		21,077,491

block 6	XXX	XXXX	129	AKR	B/B	B/C	C3H	MRL	NZW		A/H	A/J	B10	C57	DBA	NZB		BUB	FVB	LGJ	LPJ	SMJ
	30		2	2	2	2	2	2	2	X	1	1	1	1	1	1	X	0	0	0	0	0		30,249,387

block 7	XXX	XXXX	A/H	A/J	LGJ	NZW	SMJ	AKR	B/C	MRL	B10	B/B	NZB		LPJ	129		BUB	C3H	C57	DBA	FVB
Proc	32		2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	0	0	0	0	0		32,582,247
			2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	0	0	0	0	0		32,582,360
			2	2	2	2	2	0	0	2	2	0	2	X	1	1	X	0	0	0	0	0		32,582,958
			2	2	2	2	0	0	0	2	2	0	2	X	1	1	X	0	0	0	0	0		32,583,020
			2	2	2	2	2	2	2	2	2	2	0	X	1	0	X	0	0	0	0	0		32,583,946
			2	2	2	2	2	2	2	2	2	2	0	X	1	0	X	0	0	0	0	0		32,584,047
			2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	0	0	0	0	0		32,584,076
			2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	0	0	0	0	0		32,584,128
			2	2	2	2	2	2	2	0	0	2	0	X	1	1	X	0	0	0	0	0		32,584,341
			2	2	2	2	2	2	2	0	0	0	0	X	1	1	X	0	0	0	0	0		32,584,351
			2	2	2	2	2	2	2	0	0	0	0	X	1	1	X	0	0	0	0	0		32,584,767
			2	2	2	2	2	2	2	2	2	0	2	X	1	1	X	0	0	0	0	0		32,590,560
			2	2	2	2	2	2	2	2	0	0	2	X	1	1	X	0	0	0	0	0		32,592,444

block 8	XXX	XXXX	129	A/H	A/J	AKR	LPJ	NZB	NZW	SMJ		B10	B/C	LGJ	MRL	B/B		BUB	C3H	C57	DBA	FVB
			2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	0	0	0	0	0		32,595,200
			2	2	2	2	2	2	2	2	X	1	1	1	1	0	X	0	0	0	0	0		32,595,201

block 9	XXX	XXXX	129	A/H	A/J	B10	B/C	LGJ	LPJ	NZW	SMJ		AKR		B/B	BUB	C3H	C57	DBA	FVB	MRL	NZB
			2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0	0	0	0	0		32,595,975

block 10	XXX	XXXX	129	C57	LGJ	NZW	B10	C3H	MRL		B/B	B/C	DBA	A/J	AKR	A/H		BUB	FVB	LPJ	NZB	SMJ
Apc	34		1	1	1	1	0	0	0	X	2	2	2	2	2	2	X	0	0	0	0	0		34,698,546
			1	1	1	1	0	0	0	X	2	2	2	2	2	2	X	0	0	0	0	0		34,698,547
			1	1	1	1	0	0	0	X	2	2	2	2	2	2	X	0	0	0	0	0		34,698,563
			2	2	2	0	2	2	2	X	1	1	1	1	0	0	X	0	0	0	0	0		34,699,076
			2	2	2	0	2	2	2	X	1	1	1	1	0	0	X	0	0	0	0	0		34,699,352
			2	2	2	2	2	2	2	X	1	1	1	0	1	0	X	0	0	0	0	0		34,699,971
			2	2	2	2	2	2	2	X	1	1	1	0	1	1	X	0	0	0	0	0		34,700,118

block 11	XXX	XXXX	A/H	A/J	AKR	B10	B/B	B/C	C57	DBA	NZW		129	C3H	LGJ		BUB	FVB	LPJ	MRL	NZB	SMJ
Hspa9a	35		2	2	2	2	2	2	2	2	2	X	1	1	1	X	0	0	0	0	0	0		35,378,668

block 12	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	C57	DBA	MRL	NZW	SMJ		C3H		BUB	FVB	LGJ	LPJ	NZB
	37		2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0	0		37,169,741
			2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0	0		37,169,767

block 13	XXX	XXXX	AKR	B/C	A/J	B/B	DBA	129	A/H	B10	C3H	MRL		LGJ	NZW	NZB		C57		BUB	FVB	LPJ	SMJ
Hdac3	38		2	2	2	2	2	2	0	2	0	0	X	1	0	0	X	2	X	0	0	0	0		38,382,444
			2	2	2	2	2	2	0	2	0	0	X	1	0	0	X	2	X	0	0	0	0		38,382,652
			2	2	2	0	2	2	2	0	0	0	X	1	1	0	X	2	X	0	0	0	0		38,383,132
			2	2	2	2	2	2	2	2	0	0	X	1	0	0	X	2	X	0	0	0	0		38,384,296
			2	2	0	2	2	2	2	2	2	0	X	2	2	2	X	1	X	0	0	0	0		38,384,631
			2	2	2	2	0	0	2	0	0	0	X	1	1	1	X	2	X	0	0	0	0		38,385,000
			2	2	2	2	2	0	2	0	0	0	X	1	1	1	X	2	X	0	0	0	0		38,385,140
			2	2	2	2	2	2	2	2	2	2	X	1	1	0	X	2	X	0	0	0	0		38,388,559

block 14	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	DBA	LGJ	NZW	LPJ	MRL	NZB	SMJ	C57		C3H	BUB		FVB
			2	2	2	2	2	2	2	2	2	2	0	2	0	0	2	X	1	0	X	0		38,389,432
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	1		38,738,875
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	2		38,738,883
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	1		38,738,998
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	2		38,739,024
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	2		38,739,165
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	1		38,739,227
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	2	2	X	1		38,739,259
			2	2	2	2	2	2	2	2	2	2	2	0	2	2	2	X	1	1	X	1		38,739,413
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	1		38,739,430
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	2		38,739,471
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	2		38,739,694

block 15	XXX	XXXX	A/H	A/J	AKR	B/B	B/C	BUB	C3H	C57	DBA	FVB	LGJ	SMJ	B10	MRL		129	LPJ		NZB	NZW
Rnf14			2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	2	2	X	1	1		38,742,724
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	2	2		38,743,658

block 16	XXX	XXXX	A/J	B/B	B/C	C57	DBA	129	AKR	LPJ	NZW	NZB	B10	LGJ	A/H	SMJ	MRL		C3H	BUB		FVB
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	1		38,752,896
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	2	2	X	1		38,752,963
			2	2	2	2	2	2	2	2	2	0	0	2	2	2	0	X	1	0	X	2		38,753,018
			2	2	2	2	2	2	2	2	2	2	2	2	0	2	0	X	1	1	X	1		38,756,366
			2	2	2	2	2	2	2	2	2	2	2	2	0	2	2	X	1	1	X	1		38,756,389
			2	2	2	2	2	2	2	2	2	2	2	2	0	2	2	X	1	1	X	1		38,756,529
			2	2	2	2	2	2	2	2	2	2	2	2	0	2	0	X	1	1	X	1		38,756,632
			2	2	2	2	2	2	2	2	2	2	2	0	2	0	2	X	1	1	X	1		38,757,764
			2	2	2	2	2	2	2	2	2	2	2	0	2	0	2	X	1	1	X	1		38,757,768
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	1		38,759,864
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	2		38,759,932
			2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	2		38,760,169
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	2		38,760,171
			2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	2		38,760,252
			2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	1		38,760,447
			2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	1		38,760,579
			2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	1		38,760,589
			2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	1		38,760,632
			2	2	2	2	2	2	0	2	2	2