Chromosome 19 Haplotype

Chromosome 19

Run ID: 3303 Total SNPs: 1239 Total Blocks: 210 Coverage: .8 Minimum Strains: 9

block 1	XXX	XXXX	129	A/H	AKR	B/C	C3H	C57	MRL	A/J	B10	B/B	LGJ	LPJ	NZB	SMJ		DBA		NZW		BUB	FVB
Gstp1	3		2	2	2	2	2	2	2	0	2	0	0	0	0	2	X	1	X	0	X	0	0		3,824,704
Gstp2			2	2	2	2	2	2	2	2	0	2	2	2	2	0	X	2	X	1	X	0	0		3,829,496

block 2	XXX	XXXX	A/H	A/J	AKR	B/B	B/C	C3H	DBA	LGJ	MRL	NZW	SMJ		129	C57	LPJ	NZB		B10	BUB	FVB
			2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	X	0	0	0		3,829,937
			2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	X	0	0	0		3,829,940

block 3	XXX	XXXX	A/H	A/J	AKR	B/B	B/C	C3H	LGJ	MRL	SMJ		129	B10	C57	DBA	LPJ	NZB	NZW		BUB	FVB
			2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	1	X	0	0		3,830,140

block 4	XXX	XXXX	129	A/H	A/J	AKR	B/B	B/C	C3H	C57	DBA	LGJ	LPJ	SMJ	B10	MRL		NZW	BUB		FVB	NZB
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	0	X	0	0		3,830,374
Ctsf	4		2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	0	0		4,643,799

block 5	XXX	XXXX	129	A/H	A/J	AKR	B/B	B/C	C3H	C57	LPJ	NZB	SMJ		BUB	DBA	LGJ	MRL	NZW		B10	FVB
			2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	0	0		4,643,820

block 6	A/H	A/J	AKR	B/B	B/C	C57	DBA	NZB	SMJ	C3H	B10	LPJ	129		BUB	NZW		LGJ	MRL
	2	2	2	2	2	2	2	2	2	2	0	2	2	X	2	2	X	1	1	X	4,643,897
	2	2	2	2	2	2	2	2	2	2	0	2	2	X	1	1	X	2	2	X	4,644,252
Rin1	2	2	2	2	2	2	2	2	2	2	2	0	0	X	2	2	X	1	1	X	4,645,084
	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	2	2	X	4,645,262
	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	1	X	1	1	X	4,645,367
Ctsf	2	2	2	2	2	2	2	2	2	2	2	2	0	X	2	2	X	1	1	X	4,646,509
	2	2	2	2	2	2	2	2	2	0	2	2	0	X	2	2	X	1	1	X	4,646,510
	2	2	2	2	2	2	2	2	2	2	2	2	0	X	2	2	X	1	1	X	4,646,703
	2	2	2	2	2	2	2	2	2	2	2	2	0	X	2	2	X	1	1	X	4,646,762
Rin1	2	2	2	2	2	2	2	2	2	2	2	2	0	X	2	2	X	1	1	X	4,646,830

block 7	XXX	XXXX	A/H	A/J	AKR	B/B	B/C	BUB	C3H	C57	LPJ	NZW	SMJ		DBA	LGJ	MRL		129	B10	FVB	NZB
			2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	X	0	0	0	0		4,647,197

block 8	A/J	AKR	B/B	B/C	C3H	C57	A/H	LPJ	DBA	SMJ	B10	NZB	129		LGJ	MRL		NZW	BUB
	2	2	2	2	2	2	2	2	2	2	0	0	0	X	1	1	X	2	2	X	4,647,309
	2	2	2	2	2	2	2	2	2	2	0	0	0	X	1	1	X	2	2	X	4,647,493
	2	2	2	2	2	2	2	2	2	2	0	0	0	X	1	1	X	2	2	X	4,647,523
	2	2	2	2	2	2	2	2	0	2	0	0	0	X	1	1	X	2	2	X	4,647,538
	2	2	2	2	2	2	2	2	2	2	0	0	0	X	1	1	X	2	2	X	4,647,565
	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	2	2	X	4,647,810
	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	1	1	X	4,647,822
Ctsf	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	2	2	X	4,648,102
Rin1	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	2	2	X	4,648,326
Ctsf	2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	1	X	2	2	X	4,649,095
	2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	1	X	1	1	X	4,649,263
	2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	1	X	1	1	X	4,649,271
	2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	1	X	1	1	X	4,649,316
ENS::06457	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	1	0	X	4,649,779
	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	1	0	X	4,649,909
Rin1	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	1	1	X	4,650,347
	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	1	1	X	4,650,383
	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	1	1	X	4,650,390
	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	2	2	X	4,651,054
	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	1	1	X	4,651,095
	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	1	1	X	4,651,178
	2	2	2	2	2	2	0	0	0	0	0	2	2	X	1	0	X	2	2	X	4,651,270
	2	2	2	2	2	2	2	2	2	0	2	2	2	X	1	1	X	1	1	X	4,651,350
	2	2	2	2	2	2	2	2	2	0	2	2	2	X	1	1	X	1	1	X	4,651,371
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	1	1	X	4,651,414
	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	1	1	X	4,651,521

block 9	XXX	XXXX	A/H	A/J	AKR	B/B	B/C	C3H	DBA	LGJ	NZW	MRL		129	C57	LPJ	SMJ	B10		BUB	FVB	NZB
			2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	2	2	2		4,695,014
ENS::06464			2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	0	X	1	1	1		4,695,056

block 10	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	BUB	C3H	C57	DBA	FVB	LGJ	LPJ	NZW	SMJ		NZB		MRL
Rin1			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0		4,695,108

block 11	A/H	A/J	B/C	LGJ	NZW	B/B	C3H	DBA	AKR	MRL		129	B10	C57	LPJ	SMJ		FVB	BUB	NZB
	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	2	2	2	4,695,118
	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	X	1	1	1	4,695,470
	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	X	1	1	1	4,695,593
	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	2	2	2	4,695,636
Dpp3	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	1	1	1	4,695,743
	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	X	1	1	1	4,695,745
	2	2	2	2	2	0	0	0	0	2	X	1	1	1	1	0	X	2	0	0	4,696,126
Rin1	1	1	1	1	1	1	1	1	0	0	X	2	2	2	2	2	X	2	2	2	4,698,174

block 12	XXX	XXXX	129	A/H	A/J	B10	B/B	B/C	BUB	C3H	C57	FVB	LGJ	LPJ	MRL	NZB	NZW	SMJ		DBA		AKR
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0		4,698,250

block 13	XXX	XXXX	129	A/H	A/J	B/B	B/C	C57	DBA	FVB	LGJ	NZW	SMJ	AKR	B10	BUB	C3H	LPJ		MRL	NZB
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	0	1		4,698,535
			2	2	2	2	2	2	2	2	2	2	2	0	0	0	0	0	X	1	0		4,702,449

129	A/H	A/J	AKR	B10	B/B	B/C	C3H	C57	DBA	FVB	LGJ	NZW	SMJ	MRL	BUB	LPJ		NZB
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	4,703,012
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	4,703,043
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	4,703,243
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	X	1	4,703,244
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	4,703,626
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	4,703,726
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	4,703,730
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	4,703,749
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	4,703,816
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	4,703,850
2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	4,703,884
2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	2	X	1	4,704,042

block 15	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	BUB	C3H	C57	DBA	LGJ	LPJ	MRL	NZB	NZW	SMJ		FVB
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1		4,704,092
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1		4,704,153

block 16	129	A/H	A/J	AKR	B10	B/B	B/C	C3H	C57	DBA	LGJ	LPJ	NZW	SMJ	MRL		BUB	FVB		NZB
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	X	1	4,704,185
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	X	1	4,704,195
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	2	4,704,571
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	X	1	4,704,642
	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	2	2	X	1	4,705,122
Dpp3	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	X	1	4,705,240

block 17	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	C3H	C57	DBA	FVB	LGJ	LPJ	MRL	NZW	SMJ	NZB		BUB
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1		4,705,276
Rin1			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1		4,705,292

block 18	XXX	XXXX	A/H	AKR	B/C	DBA	FVB	MRL	NZW	129	A/J	B/B	BUB	C3H	LGJ		LPJ	B10	C57	SMJ		NZB
Dpp3			2	2	2	2	2	2	2	2	0	0	0	0	0	X	2	0	0	0	X	1		4,705,381
			2	2	2	2	2	2	2	0	2	2	2	2	2	X	1	1	1	1	X	2		4,705,464

block 19	XXX	XXXX	129	B10	BUB	C57	DBA	LPJ	NZB	SMJ	MRL		A/H	A/J	B/B	B/C	C3H	LGJ	NZW		FVB		AKR
			2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	1	1	X	2	X	0		4,705,502
			2	2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	2	X	1	X	0		4,705,503

block 20	XXX	XXXX	A/H	A/J	AKR	B/B	B/C	C3H	DBA	LGJ	MRL	NZW		129	B10	C57	LPJ	NZB	SMJ		BUB	FVB
Rin1			2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	1	X	1	1		4,705,565
			2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	2	2	X	1	1		4,705,614

A/H	A/J	AKR	B/B	B/C	BUB	C3H	LGJ	MRL	NZW	NZB		129	B10	C57	LPJ	SMJ		DBA		FVB
2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	X	1	X	1	4,705,699
2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	1	X	2	4,705,772
2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	2	X	2	4,705,792
2	2	2	2	2	2	2	2	2	2	2	X