Chromosome X Haplotype

Chromosome X

Run ID: 3304 Total SNPs: 403 Total Blocks: 96 Coverage: .8 Minimum Strains: 9

block 1	XXX	XXXX	A/H	A/J	B/C	BUB	C57	DBA	FVB	LGJ	LPJ	MRL	NZB	B10	B/B	C3H	AKR	129		NZW		SMJ
	5		2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	X	1		5,448,150
ENS::04317			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	X	1		5,451,379
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	X	1		5,451,383
			2	2	2	2	2	2	2	2	2	2	2	2	2	0	2	2	X	1	X	1		5,451,531
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	X	1		5,454,053
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	1		5,454,225
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2		5,454,486
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	1		5,454,635
			2	2	2	2	2	2	2	2	2	2	2	0	2	2	2	0	X	2	X	1		5,455,412
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	2	X	1		5,455,904
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	1	X	2		5,455,911
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	X	2	X	1		5,455,946
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	2		5,472,916
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	1		5,477,707
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	1		5,477,833
			2	2	2	2	2	2	2	2	2	2	2	2	0	2	2	0	X	2	X	1		5,478,552

block 2	XXX	XXXX	A/H	A/J	AKR	B10	B/C	BUB	C3H	C57	DBA	FVB	LGJ	LPJ	MRL	NZB	129		NZW	SMJ		B/B
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	0	0	X	1		5,478,586
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	2		5,479,470

block 3	XXX	XXXX	DBA	129	A/H	B/C	BUB	C3H	LGJ	A/J	FVB	C57		B10	NZB	LPJ	MRL	B/B		NZW	AKR		SMJ
			2	0	2	0	2	2	2	0	0	0	X	2	2	0	0	0	X	2	0	X	1		5,895,471
Cacna1f			2	2	0	2	0	0	2	0	2	0	X	2	0	2	2	2	X	2	0	X	1		5,897,566
			2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	0	X	1	1	X	2		5,899,719
			2	2	2	2	2	2	2	2	0	0	X	2	2	2	2	2	X	2	2	X	1		5,903,444
			2	2	2	2	2	2	2	2	2	2	X	1	1	0	0	0	X	2	2	X	2		5,905,183
			2	2	2	2	2	2	2	2	2	2	X	1	1	0	0	0	X	2	2	X	2		5,905,185
			2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	0	X	2	2	X	1		5,905,364
			2	2	2	2	2	2	0	2	2	2	X	2	2	2	2	2	X	1	1	X	2		5,906,769
			2	2	2	2	2	2	2	2	2	2	X	2	2	2	2	2	X	1	0	X	2		5,906,776

block 4	XXX	XXXX	129	AKR	B10	B/B	B/C	C57	DBA	FVB	LGJ	SMJ	BUB	LPJ	MRL	NZW		A/H	C3H		A/J	NZB
			2	2	2	2	2	2	2	2	2	2	0	0	0	0	X	1	0	X	0	0		5,910,045
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	0	1	X	0	0		5,910,213

block 5	XXX	XXXX	A/H	A/J	B10	B/B	B/C	BUB	C3H	C57	DBA	FVB	LPJ	MRL	NZB		AKR	NZW	SMJ		129	LGJ
			2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	X	0	0		5,911,673

block 6	XXX	XXXX	B/B	C3H	FVB	AKR	BUB	C57	LGJ		B/C	LPJ	129	B10	MRL	NZW	NZB		A/H	DBA	SMJ	A/J
			2	0	2	2	0	2	0	X	2	2	2	2	2	0	2	X	0	1	0	0		5,912,268
			1	1	0	0	0	0	0	X	2	2	2	0	2	2	0	X	2	0	2	2		5,916,105
			0	2	2	0	2	0	2	X	2	2	0	2	0	2	0	X	1	0	0	0		5,916,116

block 7	XXX	XXXX	129	A/H	A/J	AKR	B/C	C3H	C57	FVB	LPJ	MRL	B10	B/B	BUB	DBA	LGJ		NZW	NZB		SMJ
			2	2	2	2	2	2	2	2	2	2	0	0	0	0	0	X	1	0	X	2		5,916,174
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	X	1		5,916,498

block 8	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	BUB	C3H	C57	DBA	FVB	LGJ	LPJ	NZB	NZW	SMJ		MRL
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1		5,916,603

block 9	XXX	XXXX	129	A/H	A/J	B10	B/B	B/C	BUB	C3H	C57	DBA	LGJ	LPJ	NZB	AKR	MRL	NZW	FVB		SMJ
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1		5,919,044
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1		5,919,538
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1		5,919,616
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1		5,920,321
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1		5,920,924
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1		5,920,927
			2	2	2	2	2	2	2	2	2	2	2	2	2	0	0	0	2	X	1		5,921,636

block 10	XXX	XXXX	129	A/H	A/J	B10	B/B	B/C	BUB	C3H	DBA	FVB	LGJ	LPJ	MRL	NZB	C57		AKR	SMJ		NZW
			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	X	1		5,924,471
	6		2	2	2	2	2	2	2	2	2	2	2	2	2	2	0	X	1	1	X	2		6,111,264

block 11	XXX	XXXX	129	B/C	C3H	DBA	LGJ	A/H	A/J	B10	BUB	C57	LPJ	MRL	NZB	NZW	SMJ		B/B	FVB		AKR
			2	2	2	2	2	2	2	2	2	2	0	2	2	2	0	X	1	1	X	2		6,111,812
Kcnd1			2	2	2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	2	X	1		6,120,827
ENS::31161			2	2	2	2	2	0	0	0	0	0	2	0	0	0	2	X	1	0	X	1		6,236,001

block 12	XXX	XXXX	NZW	A/H	B/B	B/C	C57	A/J	AKR	B10	BUB	FVB	LGJ	MRL		129	LPJ	C3H	SMJ	NZB		DBA
Cybb	7		2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	1		7,772,619
			2	2	2	2	0	2	2	2	2	2	0	2	X	1	1	0	1	0	X	1		7,775,373
			2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	1		7,775,375
			2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	0	1	X	1		7,777,699
			2	2	2	2	2	2	0	2	2	2	2	2	X	1	1	1	1	1	X	1		7,779,637
			2	0	2	2	2	0	2	2	0	0	2	0	X	2	0	2	0	2	X	1		7,782,612
			2	2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	1	X	1		7,783,287
			2	2	2	2	2	0	0	0	0	2	2	2	X	1	1	1	1	1	X	1		7,783,289
			2	2	0	0	2	2	2	0	2	0	2	0	X	0	1	0	1	0	X	0		7,803,475
			2	2	2	2	2	2	2	2	2	2	0	2	X	1	1	1	1	0	X	1		7,803,477

block 13	XXX	XXXX	129	A/H	A/J	AKR	B10	B/B	B/C	C57	LGJ	MRL	NZB	SMJ		BUB		C3H	DBA	FVB	LPJ	NZW
Gria3	33		2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0	0		33,947,030

block 14	XXX	XXXX	B10	B/B	B/C	LGJ	NZB	SMJ	A/H	AKR	C57	DBA	MRL	NZW		129	C3H	LPJ		A/J		BUB	FVB
	40		2	2	2	2	2	2	2	2	2	2	2	0	X	1	0	0	X	0	X	0	0		40,455,615
			2	2	2	2	2	2	0	0	0	0	0	2	X	2	2	2	X	1	X	0	0		40,455,994

block 15	XXX	XXXX	B10	C3H	DBA	NZW	C57		MRL	A/H	B/B	B/C	AKR		NZB	129	LGJ	LPJ	SMJ		A/J	BUB	FVB
			1	1	1	1	1	X	2	2	2	2	2	X	2	2	2	2	2	X	0	0	0		40,456,112
			2	2	2	2	2	X	1	0	0	0	0	X	2	2	2	2	2	X	0	0	0		40,456,411
			1	1	1	1	0	X	2	2	2	2	2	X	2	2	2	2	2	X	0	0	0		40,456,603
			2	2	2	2	0	X	2	2	2	2	0	X	1	0	0	0	0	X	0	0	0		40,456,605
			1	1	1	1	0	X	2	2	2	2	2	X	2	2	2	2	2	X	0	0	0		40,456,606

block 16	XXX	XXXX	A/H	AKR	B10	B/B	B/C	C3H	DBA	NZW		C57	NZB		129	A/J	BUB	FVB	LGJ	LPJ	MRL	SMJ
			2	2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0	0	0	0		40,456,636

block 17	XXX	XXXX	A/H	A/J	AKR	B/C	DBA	LPJ	MRL	NZW	129	NZB	SMJ		B10	C57		B/B	BUB	C3H	FVB	LGJ
Xpnpep2			2	2	2	2	2	2	2	2	0	0	0	X	1	1	X	0	0	0	0	0		40,458,936
			2	2	2	2	2	2	2	2	2	2	2	X	1	0	X	0	0	0	0	0		40,459,020

block 18	XXX	XXXX	A/H	AKR	B10	C3H	DBA	LGJ	LPJ	MRL	NZW	SMJ		B/C	NZB		129	A/J	B/B	BUB	C57	FVB
			2	2	2	2	2	2	2	2	2	2	X	1	1	X	0	0	0	0	0	0		40,461,750

block 19	XXX	XXXX	129	A/H	AKR	B/B	B/C	LGJ	LPJ	MRL	NZB	SMJ	A/J		B10	C3H	C57	DBA	NZW		BUB	FVB
			2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	1	X	0	0		40,461,840
			2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	0	X	0	0		40,462,315
			2	2	2	2	2	2	2	2	2	2	2	X	1	1	1	1	0	X	0	0		40,462,324
			2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	0	X	0	0		40,462,331

block 20	XXX	XXXX	129	A/H	AKR	B10	B/B	B/C	C57	LGJ	LPJ	MRL	NZB	SMJ		DBA		A/J	BUB	C3H	FVB	NZW
			2	2	2	2	2	2	2	2	2	2	2	2	X	1	X	0	0	0	0	0		40,462,421

block 21	XXX	XXXX	A/H	AKR	B/B	B/C	LGJ	LPJ	MRL	NZB	SMJ	129	NZW		B10	C3H	C57	DBA		A/J		BUB	FVB
			2	2	2	2	2	2	2	2	2	2	0	X	1	1	0	1	X	2	X	0	0		40,462,424
			2	2	2	2	2	2	2	2	2	2	0	X	1	1	1	1	X	2	X	0	0		40,462,427
			2	2	2	2	2	2	2	2	2	0	2	X	2	2	2	0	X	1	X	0	0		40,464,406
			2	2	2	2	2	2	2	2	2	0	2	X	2	2	2	2	X	1	X	0	0		40,464,485

block 22	XXX	XXXX	B/B	NZB	129	A/H	A/J	AKR	B/C	LPJ	SMJ		B10	C3H	C57	NZW	DBA		LGJ		BUB	FVB	MRL
			1	1	0	1	0	0	1	0	0	X	2	2	2	2	0	X	2	X	0	0	0		40,466,640
			2	2	2	0	2	2	0	2	2	X	1	1	1	1	1	X	2	X	0	0	0		40,470,055

block 23	XXX	XXXX	129	A/H	LGJ	NZW	SMJ	AKR	B10	C3H	C57	DBA	LPJ	MRL	NZB		B/C	B/B		A/J	BUB	FVB
			2	2	2	2	2	2	2	0	2	2	2	0	0	X	1	0	X	0	0	0		40,473,638
			2	2	2	2	2	0	0	2	0	2	0	0	2	X	1	0	X	0	0	0		40,473,641
			2	2	2	2	2	2	2	2	2	0	0	2	0	X	1	1	X	0	0	0		40,473,791

block 24	XXX	XXXX	129	B10	B/C	C57	MRL	NZB	NZW	SMJ	AKR	B/B	C3H	DBA	LGJ		A/J		LPJ		A/H	BUB	FVB
			2	2	2	2	2	2	2	2	0	0	0	0	0	X	1	X	0	X	0	0	0		40,473,795
			2	2	2	2	2	2	2	2	2	2	2	2	2	X	2	X	1	X	0	0	0		40,473,872

block 25	XXX	XXXX	129	AKR	B/C	LGJ	MRL	A/H	A/J	B/B	LPJ	NZB	SMJ		B10	C3H	NZW	C57	DBA		BUB	FVB
			2	2	2	2	2	0	2	2	0	2	2	X	1	1	1	1	1	X	0	0		40,473,979
			2	2	2	2	2	2	0	0	2	2	2	X	1	1	1	0	1	X	0	0		40,474,633
			2	2	2	2	2	2	2	2	2	0	0	X	1	1	1	1	0	X	0	0		40,477,195